Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03860 875 / 0 MLS malate synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020565 [exp] 1060 / 0 AT5G03860 953 / 0.0 malate synthase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092000 [exp] 915 / 0 AT5G03860 969 / 0.0 malate synthase (.1.2) Potri.012G094532 [exp] 369 / 1e-125 AT5G03860 374 / 9e-128 malate synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF01274 [flax] [poplar] Malate_synthase Malate synthase
Representative CDS sequence Show only first row Show all	>Lus10006282 pacid=23181460 polypeptide=Lus10006282 locus=Lus10006282.g ID=Lus10006282.BGIv1.0 annot-version=v1.0 ATGTTGGGATACGCTACTCACGGCAACTCTGCTCCTGGCACTGGTAAGAAGAGAGGAGCCTACGACGCTCCTGACGGAGTAGATATTAGCGGCCGTTACG ACCAGGAATTCGCTAAGATACTTACCGTCGATGCACTCCAATTTGTCGCTGACCTCCAGAGGGAGTTCAGGGCCCGCATCAAGTATGCGCTCGATTGCCG CCGTGAAGCGAAGGCCAAGTACAATGCTGGTGGGCTTCCTGGGTTCGACCCGGCTACCCGTTTCGTTCGAGATAGCGAGTGGTCTTGTGCTCCTGTGCCC TCCGCGGCCGATTTCGAAGATGCTCTGTCGCCGACGTGGGAGAACCTGATGAGAGGGCAAGTAAACTTGAAAGATGCAGTTGATGGAACAATAACCTTCG AGGACAAGGCTAGGAACAGAGTTTACAGGTTGAATGATCAAACAGCCAAGTTGTTTGTTCGTCCCAGACGATGGCACTTACCTGAGGCACACATCTTCAT CGACGGCCAACCCGCAACCGGCTGTTTAGTCGACTTTGGCCTCTACTTTTACCACAATTACGCCAACTTCCGCAAGACACTAGGCGAAGGGTTCGGGCCG TTCTTCTACCTTCCGAAAATGGAACACTCGAGGGAGGCGAGGATATGGAACTGTGTGTTTGACAGAGCGGAGAAGATGGCCGGTATCGAGAGGGGAACCA TCAGAGCTACTGTTCTGATAGAGACCCTTCCGGCTGTGTTCCAGATGAACGAGATACTGTACGAGCTGAGAGACCACTCGCTCGGACTCAACTGTGGGAG ATGGGATTATATCTTTAGCTACGTCAAGACTTTCCAATCTCACCCTGACAGACTCCTCCCCGACCGGTTCCAAGTTGGCATGACTCAACATTTCATGAGG AGCTATTCTGAGCTCCTCATCTCCACCTGCCATAAGCGTGGCGTTCACGCCATGGGAGGCATGGCTGCCCAGATTCCAATCCGGGACGACCCAAAAGCGA ACGAGGCAGCTGTAGAGCTGGTAAGGAAGGACAAGCTCCGAGACGTGAAGGCAGGGCATGACGGGACATGGGCGGCCCATCCAGGGCTAATCCCAGCTTG CATGGAAGTGTTCACAAACATAATGGGAAACTCTCCCAACCAAATCAACACGAGAAAACGAGAAGACGCTTCGGGAATCACAGAAGAAGACCTGCTCCAG CATCCTCGAGGAGCGAGGACTATGGAAGGGCTCCGGCTCAACACTAGGGTGGGGATCCAGTATGTGGCGGCCTGGCTGACCGGAACAGGGTCAGTGCCAT TGTACAACCTGATGGAGGATGCAGCTACGGCCGAGATAAGCAGGGTTCAGAACTGGCAGTGGGTTAGGTATGGTGTTGAGCTCGACGGAGATGGGTTAGG GATGAGAGTCAACCGGGAGGTGTTGTGGAGGATTGTGGAGGAAGAGATGGGGAGGATTGAGAAGGAAGTTGGTAAGGACAAGTTCAACAAGGGGATGTAT AAGGAGGCTAGCAGGATATTTGCAAGGCAGTGTACTACGGAGAGGCTCGACGATTTCTTGACAGTCGGTGCTTATAATCACATTGTTGTCCATTTCCCAA AGGCTACTGCTTCCAGGCTTTGA
AA sequence Show only first row Show all	>Lus10006282 pacid=23181460 polypeptide=Lus10006282 locus=Lus10006282.g ID=Lus10006282.BGIv1.0 annot-version=v1.0 MLGYATHGNSAPGTGKKRGAYDAPDGVDISGRYDQEFAKILTVDALQFVADLQREFRARIKYALDCRREAKAKYNAGGLPGFDPATRFVRDSEWSCAPVP SAADFEDALSPTWENLMRGQVNLKDAVDGTITFEDKARNRVYRLNDQTAKLFVRPRRWHLPEAHIFIDGQPATGCLVDFGLYFYHNYANFRKTLGEGFGP FFYLPKMEHSREARIWNCVFDRAEKMAGIERGTIRATVLIETLPAVFQMNEILYELRDHSLGLNCGRWDYIFSYVKTFQSHPDRLLPDRFQVGMTQHFMR SYSELLISTCHKRGVHAMGGMAAQIPIRDDPKANEAAVELVRKDKLRDVKAGHDGTWAAHPGLIPACMEVFTNIMGNSPNQINTRKREDASGITEEDLLQ HPRGARTMEGLRLNTRVGIQYVAAWLTGTGSVPLYNLMEDAATAEISRVQNWQWVRYGVELDGDGLGMRVNREVLWRIVEEEMGRIEKEVGKDKFNKGMY KEASRIFARQCTTERLDDFLTVGAYNHIVVHFPKATASRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03860		MLS	malate synthase (.1.2)		Lus10006282 [exp]	0	1
AT3G14460			LRR and NB-ARC domains-contain...		Lus10011856 [exp]	2.0	0.7748
AT3G10460			Plant self-incompatibility pro...		Lus10016165 [exp]	2.0	0.8413
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10009250 [exp]	2.8	0.8398
					Lus10020192 [exp]	3.5	0.7909
AT5G59845			Gibberellin-regulated family p...		Lus10018708 [exp]	7.5	0.6947
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012691 [exp]	19.9	0.6772
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Lus10040691 [exp]	25.9	0.6975
AT1G13680			PLC-like phosphodiesterases su...		Lus10035130 [exp]	27.0	0.6814
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	29.9	0.6697
AT3G15670			Late embryogenesis abundant pr...		Lus10004395 [exp]	30.1	0.7413

Compare expression of checked genes

Lus10006282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.