Gene [FLAX] | FIBexDB

Lus10006283 [FLAX]

External link

JGI Phytozome v13

[genome browser]

Symbol

Arabidopsis homologues

Show only best Show top 10

No hit found

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10011792 [exp]	108 / 2e-27	AT2G33450	178 / 1e-56	Ribosomal L28 family (.1)
Lus10003025 [exp]	89 / 3e-19	AT5G61000	57 / 2e-08	Replication factor-A protein 1-related (.1)
Lus10042979 [exp]	67 / 6e-12	AT5G08020	54 / 5e-07	ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10036312 [exp]	60 / 1e-09	AT5G08020	67 / 3e-11	ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10016946 [exp]	59 / 2e-09	ND	/
Lus10017803 [exp]	56 / 2e-08	ND	/
Lus10029487 [exp]	54 / 5e-08	ND	/
Lus10010883 [exp]	52 / 3e-07	ND	/
Lus10042671 [exp]	51 / 4e-07	ND	41 / 0.001

Poplar homologues

Show only best Show top 10

No hit found

PFAM info

Representative CDS sequence

Show only first row Show all

>Lus10006283 pacid=23181442 polypeptide=Lus10006283 locus=Lus10006283.g ID=Lus10006283.BGIv1.0 annot-version=v1.0

ATGATGCTAAGGATGCTACCATTCGGCTCCGCCTTCTGCATCGCTAGAAGACTGGGAGCCCCTTCATGCCTGAAGATTTCTTTGCTTATTGGTGCGCGGA

TCGAGAAAACTGCAATTCTGATTCATGCCAAATATCTCGACGTCCGTCTTCAGCCAAAGGTCGTCTACAACTTGACTTCCTTTACCCTGACGTTCCCCCG

CCCCTCGCATCGTGCTACGAACAACAACCGCTACTTACAGCTTTCTTCAGCTACTATTTTCGAAGAAGTGGGAGAGCCGGGTAAAGGCTTTGTCCTCAAT

TCTTTTGAATTCGTTCCATTTGGTCAGCTGTCACTCCGTGTCCCACATTTTCCTTTCCGTATGGGTTCCGATGCTCGGGTTGTTGTTACCCTTTGGGATG

GGTTCTACAACTTGCTTGTCCCGACGTCGCTCATGTCTATAACTGCCTCAGGGTCCGTGGTCATTGCTTTTGGTGGCATGCTTGTCACAAGCTTTAGGGG

CCAACTGTCTCTTACAAGTACTTCGTCTACTCAAATTACAGTTGATCCTCAAGTTGTTCACCCGCTTCTAACATCCCACAAGGATGTACAAGGCTCTGCT

TTCGATGTTTTGCAGGCCAAATTCCCGAGCTCTGAGCTTATAGAGGAGCATGTTCGGGATTCCTATAGGACAATCGCTGAACTGCATGACCTTCCCGACT

CTTCGGCTCCTAATATGTGTGCTCAGCTTTTTAGTGTTGTGAGAATCGTTATATGTGTCAAGAAACCGTCTAATCTTTTGATGGTGGTGAGCGATGGTGT

TACAAGGCATGTAAGCTACAAGATTCAGCTTTGGGTGTTTGATTCCACCGGGGTGGAGACCTTCCTGCTTTTGGGGTACTTTGCTGACAGTATTATGCCC

ATGACTGCTGCTGATTTGCGCGGCTCCTTCCCATCGGACGGATCGGGTTTCCCTCCCCAGATAGAAATGCTCGGTGATACAATGCAGCTTTCTCATTCAC

TACTTCTGGTGTTTGGACAGTAG

AA sequence

Show only first row Show all

>Lus10006283 pacid=23181442 polypeptide=Lus10006283 locus=Lus10006283.g ID=Lus10006283.BGIv1.0 annot-version=v1.0

MMLRMLPFGSAFCIARRLGAPSCLKISLLIGARIEKTAILIHAKYLDVRLQPKVVYNLTSFTLTFPRPSHRATNNNRYLQLSSATIFEEVGEPGKGFVLN

SFEFVPFGQLSLRVPHFPFRMGSDARVVVTLWDGFYNLLVPTSLMSITASGSVVIAFGGMLVTSFRGQLSLTSTSSTQITVDPQVVHPLLTSHKDVQGSA

FDVLQAKFPSSELIEEHVRDSYRTIAELHDLPDSSAPNMCAQLFSVVRIVICVKKPSNLLMVVSDGVTRHVSYKIQLWVFDSTGVETFLLLGYFADSIMP

MTAADLRGSFPSDGSGFPPQIEMLGDTMQLSHSLLLVFGQ

DESeq2's median of ratios [FLAX]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006283 [exp]	0	1

Lus10006283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.