Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025327 [exp] 255 / 2e-83 ND / Lus10000712 [exp] 238 / 7e-78 ND / Lus10004836 [exp] 234 / 3e-76 ND / Lus10027682 [exp] 221 / 3e-71 AT1G48120 45 / 4e-06 hydrolases;protein serine/threonine phosphatases (.1) Lus10010058 [exp] 219 / 2e-70 ND 36 / 0.007 Lus10001476 [exp] 219 / 3e-70 ND / Lus10026467 [exp] 211 / 3e-66 ND / Lus10033204 [exp] 209 / 5e-65 AT2G25010 50 / 4e-07 Aminotransferase-like, plant mobile domain family protein (.1) Lus10036342 [exp] 202 / 3e-64 ND 43 / 2e-05
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10006284 pacid=23181458 polypeptide=Lus10006284 locus=Lus10006284.g ID=Lus10006284.BGIv1.0 annot-version=v1.0 ATGACGCATGCCCACATCGATTGGCTTCCATTCGGTCCACCTGACTTCGACTGTGAGGCTCGATGGTCCATGTATAGTGGGGGCATACATGCATTCGACT ACGTTGAACCCCACGATCCCAGCCGTGTGTTGCGTCAGTACGGCTACCGACAGACGATCCCGGATTTGATTCTCACGCCCGAGTTAGCTTCTCGACCAGC AGATGTCAGGCACTCCAGGTTTGACTACAGCCGGTTTGGGCATTTGTTGGCCCCGATGTACTTTAGTACGCCTAGTGTGCCCGGATCGCCTGACGGTAAC GCGTCCCCGGAGTACATGGTGTGCTACCTCGACCGTACACACTCACAGATCGTCCCCACCCATGCACCTGATATGCCACACCCACTGATGGCCCCAAAGC AGGATATCGATCTTTCTGCGCTGGGTTGGCCCCCTTGTATGGGTCAGGTGGTAGGGCCGAGTTCATTGACCGGGCGGGAGAGTACTACGATGTCGTTGAG GGCATGCACGGTTTGTGGTCTCAGGGAGTTGGGATTATGCCCCCCACGATCGTGGAACAATTGCAGTTCATCCCGGTATATGTCACGCCGCAATGCTGTG CGAGTCGCCACTCGGCCCCTTCCCAAACCGAATGGAATGGCGGCATTGGCCTCACCCCGTCCACCTCAGCCAACTCGATCTATAACCAATGGTTCACCGT GCATACCAGCTCCACAACTCGATCTGGACGCTGAACGTGTCGGGCACGCAGCGATCAGACATCAATTTCCTCATTCCCATATGCAAAACTGGGAGCAGAG CTTTTGGACTTTGCTGGCGGCGGCGGCGGCAGCCGCAATCGTTCTTTTATCATGGATGCGCCGCCGCCGCCCGTCTGATGGTGGCCGGAAACAGAGTCAA CAGCAGCAGGTAGATGACGATGATCATCACGAGTCCTTGGACGAACCTGATAGTCCGGAATACGATAGCTTCATCGCCGCGTGGCGGAATAGCAGTGTAG TCTCTCGGTTATCGGATGACGTCCCGTTGCCGCCGGCGTTTGCGTCTGAGAAATCCGTCAAATGTATAACGAAATACGAGCTTTGCGATGACGGGAATGT CGAATGTAATGGCATGTCCGAGGCGGAGGAGCTACATGATGATGCGGTGCCGCAATTTTCCGGACCGGTGGGGTTAAAGGAGCGATTCAAGGTTAAGCCA CGTGGTTTCATGAACGCGACAACGAAGAACTAA
AA sequence Show only first row Show all	>Lus10006284 pacid=23181458 polypeptide=Lus10006284 locus=Lus10006284.g ID=Lus10006284.BGIv1.0 annot-version=v1.0 MTHAHIDWLPFGPPDFDCEARWSMYSGGIHAFDYVEPHDPSRVLRQYGYRQTIPDLILTPELASRPADVRHSRFDYSRFGHLLAPMYFSTPSVPGSPDGN ASPEYMVCYLDRTHSQIVPTHAPDMPHPLMAPKQDIDLSALGWPPCMGQVVGPSSLTGRESTTMSLRACTVCGLRELGLCPPRSWNNCSSSRYMSRRNAV RVATRPLPKPNGMAALASPRPPQPTRSITNGSPCIPAPQLDLDAERVGHAAIRHQFPHSHMQNWEQSFWTLLAAAAAAAIVLLSWMRRRRPSDGGRKQSQ QQQVDDDDHHESLDEPDSPEYDSFIAAWRNSSVVSRLSDDVPLPPAFASEKSVKCITKYELCDDGNVECNGMSEAEELHDDAVPQFSGPVGLKERFKVKP RGFMNATTKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006284 [exp]	0	1
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	7.4	0.9593
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	8.7	0.9507
AT3G47570			Leucine-rich repeat protein ki...		Lus10033329 [exp]	10.4	0.9447
AT3G47570			Leucine-rich repeat protein ki...		Lus10033330 [exp]	11.8	0.9455
AT5G41810			unknown protein		Lus10003901 [exp]	12.6	0.9563
					Lus10043397 [exp]	14.9	0.9437
					Lus10017917 [exp]	15.1	0.9534
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10023918 [exp]	15.7	0.9292
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	16.5	0.9537
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10014415 [exp]	18.2	0.9448

Compare expression of checked genes

Lus10006284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.