Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006286 pacid=23181447 polypeptide=Lus10006286 locus=Lus10006286.g ID=Lus10006286.BGIv1.0 annot-version=v1.0 ATGGAGAGGTCGGAGAAAGAAGAAGAAGAAATGGGTGGCGGCCGCCGGTGGAATAGTTGGTGGCAACAGTTCATTAATGTTATAGCTAGATGCCGCACGC GACTCTCAGCTTTGTTCGGAGATTGCTGCCGTCGGAAGCAGAGGACTGGTCGTTATCGGTATGAAGATTGGAGGGTTACTAAGAAAAGTGGTAGATCTTC CGAACCAGATTTGCTGGATCTCGAGGGTGGTTCAAGGGAAGGCATTTACCCGACTTCTTCTAAGACAGGTTTTAGCTAG
AA sequence Show only first row Show all	>Lus10006286 pacid=23181447 polypeptide=Lus10006286 locus=Lus10006286.g ID=Lus10006286.BGIv1.0 annot-version=v1.0 MERSEKEEEEMGGGRRWNSWWQQFINVIARCRTRLSALFGDCCRRKQRTGRYRYEDWRVTKKSGRSSEPDLLDLEGGSREGIYPTSSKTGFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006286 [exp]	0	1
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	2.2	0.8827
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10023482 [exp]	2.2	0.8654
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	2.8	0.8818
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10013362 [exp]	3.5	0.8739
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	6.3	0.8502
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	7.3	0.8800
AT1G03590			Protein phosphatase 2C family ...		Lus10031631 [exp]	11.0	0.8315
AT5G25360			unknown protein		Lus10030101 [exp]	13.7	0.8105
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	14.2	0.8553
AT5G15240			Transmembrane amino acid trans...		Lus10005239 [exp]	15.0	0.8058

Compare expression of checked genes

Lus10006286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.