Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18010 592 / 0 Major facilitator superfamily protein (.1) AT1G18000 592 / 0 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020560 [exp] 726 / 0 AT1G18010 573 / 0.0 Major facilitator superfamily protein (.1) Lus10019528 [exp] 708 / 0 AT1G18010 659 / 0.0 Major facilitator superfamily protein (.1) Lus10043371 [exp] 704 / 0 AT1G18010 657 / 0.0 Major facilitator superfamily protein (.1) Lus10019527 [exp] 558 / 0 AT1G18010 578 / 0.0 Major facilitator superfamily protein (.1) Lus10009416 [exp] 400 / 5e-138 AT1G18010 405 / 1e-140 Major facilitator superfamily protein (.1) Lus10009415 [exp] 104 / 2e-26 AT1G18010 108 / 1e-28 Major facilitator superfamily protein (.1) Lus10043370 [exp] 95 / 1e-22 AT1G18010 103 / 3e-26 Major facilitator superfamily protein (.1) Lus10009413 [exp] 0 / 1 AT1G18010 152 / 2e-47 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005100 [exp] 645 / 0 AT1G18010 630 / 0.0 Major facilitator superfamily protein (.1) Potri.012G011000 [exp] 456 / 7e-159 AT1G18010 422 / 5e-146 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF05978 [flax] [poplar] UNC-93 Ion channel regulatory protein UNC-93
Representative CDS sequence Show only first row Show all	>Lus10006288 pacid=23181456 polypeptide=Lus10006288 locus=Lus10006288.g ID=Lus10006288.BGIv1.0 annot-version=v1.0 ATGGGAACCGCCACCGCTGACCAAGAATCCGGGGTCGTGGTCGCCGGGAAATCCCGATTCCGGTACAACTCGCCCTTAGTGCAAGTGATCCTCATCGGAT TCGTCTGCTTCTGCTGCCCAGGGATGTTCAACGCACTCTCCGGGATGGGCGCCGGCGGGCAAGTGGACCCCACCGCCGCCAACACCGCCTTATACACCAC CTTCGCCGTCTTCGGTGTCCTCGGCGGCGGGTTTTACAACATCCTCGGCCCTCGCCTCACCCTCGCAGCGGGTTGCTCCACCTACGTGCTCTACGCCGGC TCTTTCCTTTATTACAACCATTACAAGCACCAGGCGTTCGCCATCGTCGCCGGCGCGATTCTCGGTGTCGGCGCTGGGTTCCTCTGGGCAGGTCAGGGAG CGATCATGACGTCATACCCGCCCCCGAACAGGAAAGGAACCTACATATCCCTCTTCTGGTCAATCTTCAACACCGGCGGAGTCATCGGCGGCCTAATCCC CTTCGCTTTAAACTACCATAGCTCCGCCCCTTCGGTCAGCGACGGGACCTATATCGGGTTCATAATCTTCATGTCCATCGGAACCTTACTCTCCTTCGCA ATCCTCCCGCCGGCGAAGGTCATCCGCGACGACGGCAGCCAATGCACCCAAATCAAATACTCCAAAGTCTCCACAGAGGCGCTCGAAATCCTCAAGCTAT TCGGAAATTGGAGGATGCTATTAATTGCTCCGGCGGCTTGGGCGTCCAATTTCTTCTACACTTACCAATTCAACAACGTCAACGCCGCCCGATTCAACGT CAGAACTAGGGGGTTGAACAACGTCTTCTACTGGGGTGCTCAGATGATCGGATCTTTCGCCATCGGGTACGTGTTGGACTTCACATTCAAGAGCAGGAGA AATAGGGGATTTTTAGGGATTGCTATTGTCGGGGTGTTGGGTACTGGAATTTGGGGCGGCGGATTGGCTGACCAATTAGGTTACTCATTCGAGAAAATGC CGGAGAAGCTGGATTTCAAAAACTCCGGTGGGAAGTTTGCCGGTCCGTTCATTTTGTATTTTGGGTACGGGTTCCTAGACGCGGTTTTCCAGAGTACGGT TTACTGGGTGATTGGAGCTCTAGCAAATGATTCGGAGATTCTGAGTCGGTACGTTGGGTTCTACAAGGGAGTTCAGAGCGCTGGAGCGGCGGTGGCGTGG CAGATGGATACGAAGAAAGTTCCGATGATTAGGCAGTTGGCGGTGAACTGGGTTTTAACGACAGTGAGCTATCCGTTGCTAGCAATTCTGGTGGCGTATG CGGTGAAGGATGAGGATGGTGATGACGGCGTTAAGGGGGAGGATGGGATTGTAAAGGGAGATGGTTTGGGTGGTGAAGTTGGTAATTTGGTTGATGTTGA TGGTAAGGTTAACAAGCCGGTTTAG
AA sequence Show only first row Show all	>Lus10006288 pacid=23181456 polypeptide=Lus10006288 locus=Lus10006288.g ID=Lus10006288.BGIv1.0 annot-version=v1.0 MGTATADQESGVVVAGKSRFRYNSPLVQVILIGFVCFCCPGMFNALSGMGAGGQVDPTAANTALYTTFAVFGVLGGGFYNILGPRLTLAAGCSTYVLYAG SFLYYNHYKHQAFAIVAGAILGVGAGFLWAGQGAIMTSYPPPNRKGTYISLFWSIFNTGGVIGGLIPFALNYHSSAPSVSDGTYIGFIIFMSIGTLLSFA ILPPAKVIRDDGSQCTQIKYSKVSTEALEILKLFGNWRMLLIAPAAWASNFFYTYQFNNVNAARFNVRTRGLNNVFYWGAQMIGSFAIGYVLDFTFKSRR NRGFLGIAIVGVLGTGIWGGGLADQLGYSFEKMPEKLDFKNSGGKFAGPFILYFGYGFLDAVFQSTVYWVIGALANDSEILSRYVGFYKGVQSAGAAVAW QMDTKKVPMIRQLAVNWVLTTVSYPLLAILVAYAVKDEDGDDGVKGEDGIVKGDGLGGEVGNLVDVDGKVNKPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18010			Major facilitator superfamily ...		Lus10006288 [exp]	0	1
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035301 [exp]	5.0	0.9239
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022195 [exp]	8.0	0.9211
AT1G76360			Protein kinase superfamily pro...		Lus10030743 [exp]	10.8	0.9125
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	18.3	0.9214
AT2G14095			unknown protein		Lus10001299 [exp]	25.9	0.9091
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	26.1	0.9171
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	26.6	0.9213
AT1G06840			Leucine-rich repeat protein ki...		Lus10034445 [exp]	27.3	0.9134
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	27.9	0.9007
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	28.1	0.9184

Compare expression of checked genes

Lus10006288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.