Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25240 66 / 1e-14 unknown protein AT5G14890 52 / 2e-08 NHL domain-containing protein (.1) AT5G62865 50 / 3e-08 unknown protein AT3G48020 47 / 2e-07 unknown protein AT3G01430 45 / 4e-06 unknown protein AT5G35090 39 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003184 [exp] 171 / 2e-53 AT1G04700 94 / 3e-21 PB1 domain-containing protein tyrosine kinase (.1) Lus10001942 [exp] 76 / 1e-17 AT5G14890 79 / 1e-17 NHL domain-containing protein (.1) Lus10001933 [exp] 74 / 6e-17 AT5G14890 78 / 4e-17 NHL domain-containing protein (.1) Lus10001932 [exp] 74 / 6e-17 AT5G14890 76 / 1e-17 NHL domain-containing protein (.1) Lus10033413 [exp] 62 / 2e-12 AT5G14890 96 / 3e-23 NHL domain-containing protein (.1) Lus10032160 [exp] 45 / 2e-06 AT5G14890 82 / 1e-19 NHL domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G114200 [exp] 83 / 7e-21 AT5G62865 57 / 1e-10 unknown protein Potri.006G259300 [exp] 74 / 4e-17 AT5G25240 47 / 2e-07 unknown protein Potri.006G190100 [exp] 71 / 1e-16 AT5G25240 64 / 3e-14 unknown protein Potri.012G078300 [exp] 63 / 4e-13 AT5G62865 77 / 6e-18 unknown protein Potri.015G073800 [exp] 61 / 4e-12 AT5G62865 87 / 5e-22 unknown protein Potri.003G101300 [exp] 58 / 4e-11 AT5G14890 125 / 6e-34 NHL domain-containing protein (.1) Potri.001G132100 [exp] 55 / 6e-10 AT3G01430 122 / 7e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006290 pacid=23153417 polypeptide=Lus10006290 locus=Lus10006290.g ID=Lus10006290.BGIv1.0 annot-version=v1.0 ATGGAAACAGAGCAATTCCGTAATCCACCCGGCGGCTATCGTGATGATGATGAAGAAGAAGAAGAAGAAGAAGGTACATCATCATCATCAACCTTCTTAG GCTGTAACTGTTTCGGCTCCTCTTTCTCGAAATGGAGAAACAACGATAGCAGCAACAGCTACCTTCTTACGCGGCAGAAAACAGAGTCCTCGTCATTGTC GTCGTCGTGGGTGATGGAGAAGCTGAAGAAAGTGAAGGAGATATCTGAGATGGTTGCTGGGCCCAAATGGAAGAATTTCATAAGGAGGAGGAAGCAGAGG AATAATTATAACAAGGGATTCTACTACAACGCCGAGAGTTACGCGCTTAACTTCGACTGTGGTGAAGAGGACGACAATGAATATGATGATGTTCGTGGCT TTTCTTCCAGATTCGCTGCTGTTCCTCCTCCTCCTCCTCATGTCTGA
AA sequence Show only first row Show all	>Lus10006290 pacid=23153417 polypeptide=Lus10006290 locus=Lus10006290.g ID=Lus10006290.BGIv1.0 annot-version=v1.0 METEQFRNPPGGYRDDDEEEEEEEGTSSSSTFLGCNCFGSSFSKWRNNDSSNSYLLTRQKTESSSLSSSWVMEKLKKVKEISEMVAGPKWKNFIRRRKQR NNYNKGFYYNAESYALNFDCGEEDDNEYDDVRGFSSRFAAVPPPPPHV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25240			unknown protein		Lus10006290 [exp]	0	1
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10041273 [exp]	1.4	0.9601
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001103 [exp]	10.0	0.9577
AT5G09360		LAC14	laccase 14 (.1)		Lus10006157 [exp]	15.0	0.9542
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10008066 [exp]	19.7	0.9284
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10027752 [exp]	20.2	0.9530
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10010391 [exp]	23.6	0.9448
AT1G17860			Kunitz family trypsin and prot...		Lus10039163 [exp]	26.5	0.9508
AT1G62420			Protein of unknown function (D...		Lus10003258 [exp]	27.0	0.9472
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	28.6	0.9488
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Lus10039469 [exp]	35.1	0.9497

Compare expression of checked genes

Lus10006290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.