Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25220 454 / 2e-158 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT5G11060 447 / 4e-156 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT4G32040 394 / 3e-135 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT1G62990 347 / 2e-118 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT1G70510 107 / 3e-26 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT1G23380 107 / 7e-26 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT4G08150 106 / 3e-25 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G62360 99 / 1e-22 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT5G02030 59 / 3e-09 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) AT2G27220 59 / 4e-09 HD BLH5 BEL1-like homeodomain 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003183 [exp] 421 / 1e-148 AT5G25220 381 / 2e-133 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001934 [exp] 405 / 8e-140 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001941 [exp] 404 / 2e-139 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2) Lus10024485 [exp] 298 / 1e-99 AT1G62990 406 / 4e-144 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10017824 [exp] 211 / 1e-66 AT1G62990 269 / 9e-92 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10001195 [exp] 139 / 3e-39 AT1G62990 189 / 2e-60 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10012407 [exp] 126 / 6e-33 ND / Lus10005609 [exp] 115 / 2e-29 ND / Lus10005130 [exp] 108 / 1e-27 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G259400 [exp] 473 / 5e-166 AT5G25220 539 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.006G190000 [exp] 467 / 6e-165 AT5G25220 434 / 4e-152 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G114100 [exp] 462 / 6e-163 AT5G25220 441 / 6e-155 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G022700 [exp] 462 / 1e-161 AT5G25220 513 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.001G112200 [exp] 362 / 3e-124 AT1G62990 466 / 2e-167 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Potri.005G014200 [exp] 129 / 9e-34 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 123 / 1e-31 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.006G270401 [exp] 114 / 4e-28 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.011G011101 [exp] 114 / 4e-28 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.012G087100 [exp] 107 / 1e-25 AT1G23380 323 / 1e-109 KNOTTED1-like homeobox gene 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03791 [flax] [poplar] KNOX2 KNOX2 domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF03790 [flax] [poplar] KNOX1 KNOX1 domain CL0123 [flax] [poplar] PF03789 [flax] [poplar] ELK ELK domain
Representative CDS sequence Show only first row Show all	>Lus10006291 pacid=23153419 polypeptide=Lus10006291 locus=Lus10006291.g ID=Lus10006291.BGIv1.0 annot-version=v1.0 ATGGCGTTCCAAGACCACATGTCTCAAGAAATGGGTTTCCAGCCGGCGCTATCGGCGGCCGGCCCGTCCTGGCTGAGCAACGCCGTCCTCGGCGGAAGCA GAGGCAGCGACAGGAGCGATAACGACAGCAATACCAACAACAACAACAATCACAGCAACGTCGGCGGCGGAGACGAGGAGCTGATAGACGGCGGTGGTGG CGGAGGAGGAGGCGGAGGAATCGGGGATTGGGAGAGAGCGAAATGCAAAGCGGACATACTGTCTCATCCTCTGTACGAGCAGCTGTTATCTGCACACGTG GCGTGCCTCAGAATCGCCACGCCGGTTGACCAGCTGCCGAGGATCGACGCCCAGCTGGCGCAGTCGCAGGAGGTGGTAGCGAAGTACTCCGTCGTCGGCA ACGGTCCCGTGGTGGACGAGAAGGAGCTCGATCAGTTCATGACACATTATGTTCTGTTGCTCTGTTCGTTCAAAGACCAACTGCAACAACATGTTCGAGT TCATGCTATGGAGGCAGTCATGGCTTGCTGGGAGCTTGAGCAAGCGCTTCAGAGCCTCACTGGTGTATCTCCTGGAGAGGGCACAGGTGCAACGATGTCC GATGACGATGATGACCAAGTTGATAGTGATACCAACTTGTACGACGCAAGTATGGATGCCATGGATACAATGGGATTCGGTCCCTTAGTCCCTACTGAAA CTGAGAGGTCACTCATGGAGCGTGTAAGGCTAGAACTGAAGCATGAACTCAAACAGGGTTACAAGGAGAAGCTAGTGGACATCAGAGAGGAGATCCTCCG CAAGAGAAGAGCAGGAAAACTGCCTGGCGATACAACATCCGTTTTGAAATCTTGGTGGCAATCACATTCCAAATGGCCATATCCAACTGAGGAAGACAAA GCAAGACTTGTTCAGGAGACAGGACTGCAGTTGAAGCAGATAAACAACTGGTTCATTAACCAGAGAAAGAGGAACTGGCACAGCAATCCTTCAGGATCTA CTGTGAAGAGCAAAAGAAAGAAAACAAACTCCTCCTTCTCGAGACCACCCTTGGATGACCTCACCGATCACCCGAGTACCATCATTAGCTTGGGGAGCAT TGTAGAGCTCGATGTTCACTCACCAACCTACCTCTACCCTCCTCAAGTATACACATTCACAAGGGGGAAGCCACAACAAGGAAAGAGTTGGCGTTCACAA CCGCTTCGGCTCCTCCATATCTCTCTAAGGGTGCTACTTGACATTCAACTCCAATCCTTGAAGAAGCTAATGGAATTCAAGGAGGTTCTAGGTTGGGGAG CATAA
AA sequence Show only first row Show all	>Lus10006291 pacid=23153419 polypeptide=Lus10006291 locus=Lus10006291.g ID=Lus10006291.BGIv1.0 annot-version=v1.0 MAFQDHMSQEMGFQPALSAAGPSWLSNAVLGGSRGSDRSDNDSNTNNNNNHSNVGGGDEELIDGGGGGGGGGGIGDWERAKCKADILSHPLYEQLLSAHV ACLRIATPVDQLPRIDAQLAQSQEVVAKYSVVGNGPVVDEKELDQFMTHYVLLLCSFKDQLQQHVRVHAMEAVMACWELEQALQSLTGVSPGEGTGATMS DDDDDQVDSDTNLYDASMDAMDTMGFGPLVPTETERSLMERVRLELKHELKQGYKEKLVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDK ARLVQETGLQLKQINNWFINQRKRNWHSNPSGSTVKSKRKKTNSSFSRPPLDDLTDHPSTIISLGSIVELDVHSPTYLYPPQVYTFTRGKPQQGKSWRSQ PLRLLHISLRVLLDIQLQSLKKLMEFKEVLGWGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10006291 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10028782 [exp]	1.7	0.9326
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	2.0	0.9230
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	2.4	0.9207
AT4G35840			RING/U-box superfamily protein...		Lus10028406 [exp]	3.3	0.8924
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10026457 [exp]	6.3	0.8647
AT5G17680			disease resistance protein (TI...		Lus10041078 [exp]	14.7	0.8919
AT3G53210			nodulin MtN21 /EamA-like trans...		Lus10028351 [exp]	20.6	0.8944
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10040328 [exp]	20.8	0.9004
AT2G27770			Plant protein of unknown funct...		Lus10014372 [exp]	21.2	0.9131
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10009718 [exp]	23.3	0.8946

Compare expression of checked genes

Lus10006291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.