Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10200 1049 / 0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT5G43120 502 / 1e-171 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT3G50030 403 / 3e-134 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT4G30480 51 / 1e-06 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT4G12400 50 / 6e-06 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT5G21990 49 / 1e-05 OEP61, TPR7 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56090 46 / 3e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12270 47 / 4e-05 Hop1 Hop1, stress-inducible protein, putative (.1) AT3G58620 47 / 5e-05 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT4G22670 46 / 7e-05 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029573 [exp] 1225 / 0 AT5G10200 1056 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10018706 [exp] 452 / 2e-151 AT5G43120 534 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10024789 [exp] 449 / 5e-151 AT5G43120 533 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10035117 [exp] 49 / 6e-06 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10028919 [exp] 50 / 7e-06 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10032234 [exp] 49 / 1e-05 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10031983 [exp] 48 / 2e-05 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10004336 [exp] 47 / 4e-05 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10036162 [exp] 47 / 4e-05 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076300 [exp] 1117 / 0 AT5G10200 1113 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.007G092100 [exp] 1105 / 0 AT5G10200 1085 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.002G120800 [exp] 558 / 0 AT5G43120 635 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.007G052300 [exp] 545 / 0 AT5G43120 580 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.018G100700 [exp] 52 / 7e-07 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 51 / 1e-06 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.011G021000 [exp] 51 / 2e-06 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.012G045000 [exp] 49 / 4e-06 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.005G014100 [exp] 49 / 1e-05 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.012G046900 [exp] 47 / 3e-05 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006301 pacid=23178362 polypeptide=Lus10006301 locus=Lus10006301.g ID=Lus10006301.BGIv1.0 annot-version=v1.0 ATGGAAAAGGGATCTGCAGACTGTCCATATCCAGGGTGTTTTTTCTGTGTCATGAAAGAAGGAAATCCGAGTAAGCGTAGATCAAGTATATTGAAGTTTT TCAGAGAACTTCCTTCACAAGATGATGACGGCCAGGTGCTCCCTATTAGTGGACTATGGAACACTGCCATGGCACATCCAAATGATCCGGAGTTTATAGA GTTGGGGATCTTTGAATGTATGGCTTCACTGATTTGGAAGGGCTTGAAGAATCGCCGGTGGCTTGCTCATGATCAGAACATATATATTCCTTATTATGCT GCTCATATTATTGGATCCTATACCATGAACATGGAGGAATTTGCGGAGAGCTCTGTCCATGCTGGGGTGATTCCTCCCTTGATTGAGCTTCTTAGGGGGA GACTGACTTGGGTTGAGCAAAGAGTTGCAGTAAGAGCTTTAGGACATTTGGCAACATATCCTAGCACTTTTCCTGCTATAGCAAGTCACGGGGAAATTCT TGAACTGTCGATTCAACTGGCAATGAGTTCACTAGAAATAGTATACTCGCACTTTTACCAATACGTTGATAGAAGGCTTAGTTATCACTGTGATTTGCTA ACTCGTGGAATGGGCGGTGTTGAAATGGAGTCCAGGAAAGCAGAGGAATGGGCTAGTCAATTGCAGTGTTGGTCACTTCAGCTTATTAATTCGTATGCTT TTAAACCCGAGTTTCTCCCAACAATCTGTAAACCTGAATTCCTTGTGAAACTTCCGGGGATGTGGGGTGGACTTGTCAATGAAAACTCTCCTGCTGGAAT TGGCTTGCTTAGGACAGTTTGCCATCATAAGCTTGGTAGGGGACCTGTGGCTAGCTGTCCTGGTATTGTTGAGGCACTGTGTAATATTGCTCGGTCATCA GATGATTGGCAGTACATGGCTATAGAATGTCTTCTTTGGTTGATCCAAGACCCAAGTACATGCCACAAGGTTATAGACAAAGCAGTACCTGCACTTGTAG ACCTTGCTGAGATCACAGCCCTTGGAGATCACAAAAAGCTTGGGGATTCAATAGTCAGTGTCCTCCAAGAGTGTGTTCAATCACACGGGAGTGAGGAATG GATGAGTAACCGGGTGAAAGAAGCAATAGATGAACTGCTCAAGTCCAAACAAAGATTAAAATGGGAAAAGAGCATAGTAAAGGAGGATCTCCACATTAAG CAGGCAGCGGGTTTAGTGGTTAAACTCGAAGGAAATTCCTTGTTCTCATCAGGAAATATAACTGGAGCTGTGGCAAAGTACTCGGAAGCATTGGACTTAT GTCCGGTCCGGTCAAAGAAGGAGAGAGTTGTTTTGTACAGCAATCGAGCTCAGTGCTATCTCCTGCTACAGCAACCGCATGCTGCAATAAGCGACGCCAC ACGTGCACTTTGCCTGCACACCCCGCTCAACCGCCATGCGAAAAGCCTCTGGAGAAGAGCTCAGGCTTACGATATGTTGGGCTTAGCAAAAGAGAGCTTG TTAGATGCCATTCTCTTCATCAACGAATGCTCCCAGTCAAACGATCCCGATCTCTGTCTGAGGCAAAACAAAGTCCCCGACTATGCAGAACGACTGGTGA AGAAGCAGATGCGTACCGCCTGGTTATTTAGGGAGGCAGCCATCAAACATGGAGGAGTCCAGTGCGAGGGTGACGCTCGCGCGATGTACGGGCAGGAAAG TGACGGTTCGGAATGGGAAACGGCTAGCGAAAGTGATGTAGGAAACGATGACGGAAGGGATGAAATAGCGGGTGATGATGAGGATGACGGTGACATCGAA TGGAGAAACGAAGACAAGAGGAAGGGCAAATATGATCGACCACCATTGAAAGGTACCATTTTTAACACTTGCATTCGATTTTATGTTCGGTCTCCCTTTC CGAATCCAAGTAAGAGACTTTTGAATGCTTTGTTTGATCAATGA
AA sequence Show only first row Show all	>Lus10006301 pacid=23178362 polypeptide=Lus10006301 locus=Lus10006301.g ID=Lus10006301.BGIv1.0 annot-version=v1.0 MEKGSADCPYPGCFFCVMKEGNPSKRRSSILKFFRELPSQDDDGQVLPISGLWNTAMAHPNDPEFIELGIFECMASLIWKGLKNRRWLAHDQNIYIPYYA AHIIGSYTMNMEEFAESSVHAGVIPPLIELLRGRLTWVEQRVAVRALGHLATYPSTFPAIASHGEILELSIQLAMSSLEIVYSHFYQYVDRRLSYHCDLL TRGMGGVEMESRKAEEWASQLQCWSLQLINSYAFKPEFLPTICKPEFLVKLPGMWGGLVNENSPAGIGLLRTVCHHKLGRGPVASCPGIVEALCNIARSS DDWQYMAIECLLWLIQDPSTCHKVIDKAVPALVDLAEITALGDHKKLGDSIVSVLQECVQSHGSEEWMSNRVKEAIDELLKSKQRLKWEKSIVKEDLHIK QAAGLVVKLEGNSLFSSGNITGAVAKYSEALDLCPVRSKKERVVLYSNRAQCYLLLQQPHAAISDATRALCLHTPLNRHAKSLWRRAQAYDMLGLAKESL LDAILFINECSQSNDPDLCLRQNKVPDYAERLVKKQMRTAWLFREAAIKHGGVQCEGDARAMYGQESDGSEWETASESDVGNDDGRDEIAGDDEDDGDIE WRNEDKRKGKYDRPPLKGTIFNTCIRFYVRSPFPNPSKRLLNALFDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10200			ARM-repeat/Tetratricopeptide r...		Lus10006301 [exp]	0	1
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	1.7	0.8501
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10034585 [exp]	4.9	0.7873
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Lus10018756 [exp]	15.9	0.7998
AT1G34320			Protein of unknown function (D...		Lus10006049 [exp]	16.6	0.7533
AT4G27450			Aluminium induced protein with...		Lus10018484 [exp]	17.1	0.8141
					Lus10011136 [exp]	19.2	0.8014
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10002640 [exp]	19.4	0.7852
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	19.8	0.7689
AT3G44850			Protein kinase superfamily pro...		Lus10005363 [exp]	22.2	0.7739
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	23.2	0.7811

Compare expression of checked genes

Lus10006301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.