Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11650 281 / 2e-96 ATOSM34 osmotin 34 (.1) AT1G75050 170 / 2e-52 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 166 / 3e-51 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G75030 164 / 3e-50 ATLP-3 thaumatin-like protein 3 (.1) AT1G77700 162 / 3e-48 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75800 160 / 1e-47 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 157 / 2e-47 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 155 / 1e-45 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G20030 152 / 5e-45 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 149 / 2e-44 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007034 [exp] 352 / 2e-124 AT4G11650 293 / 5e-101 osmotin 34 (.1) Lus10006690 [exp] 350 / 1e-123 AT4G11650 292 / 1e-100 osmotin 34 (.1) Lus10017170 [exp] 311 / 3e-108 AT4G11650 251 / 2e-84 osmotin 34 (.1) Lus10024511 [exp] 288 / 8e-99 AT4G11650 315 / 5e-109 osmotin 34 (.1) Lus10023897 [exp] 171 / 5e-53 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10025055 [exp] 155 / 1e-46 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025629 [exp] 157 / 4e-46 AT1G77700 377 / 4e-130 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 155 / 7e-46 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10032914 [exp] 152 / 2e-45 AT5G24620 353 / 1e-121 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107800 [exp] 334 / 1e-117 AT4G11650 291 / 1e-100 osmotin 34 (.1) Potri.001G107950 [exp] 331 / 2e-116 AT4G11650 287 / 6e-99 osmotin 34 (.1) Potri.001G107600 [exp] 290 / 9e-100 AT4G11650 356 / 1e-125 osmotin 34 (.1) Potri.001G102400 [exp] 288 / 4e-99 AT4G11650 360 / 2e-127 osmotin 34 (.1) Potri.018G096063 [exp] 283 / 2e-97 AT4G11650 314 / 2e-109 osmotin 34 (.1) Potri.002G087100 [exp] 164 / 8e-50 AT1G77700 384 / 2e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G173900 [exp] 159 / 6e-48 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.012G004800 [exp] 158 / 3e-47 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 157 / 2e-46 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.001G221900 [exp] 154 / 3e-46 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10006302 pacid=23178377 polypeptide=Lus10006302 locus=Lus10006302.g ID=Lus10006302.BGIv1.0 annot-version=v1.0 ATGGCTTCCCTTTCCCTCAAAGCAACCATCTCTCTACTAGCCATCGCAATCCTCACCACGTCCTTAACCATCTCGACCAACGCGGCCCGCTTCGACATAA CAAACAAGTGCCCGTACACGGTATGGGCAGCGTCCGTCCCCGTAGGGGGCGGCCGCCAGCTCAACTCCGGCCAGACATGGACCATCGACGCCCCTCCTGG GACCGCACAAGCCAGGATATGGGCCAGGACCAACTGCAGGTTCGACGCCTCCGGGAGGGGCAAATGCCAGACTGGGGACTGCGGCGGGGTCTTGCAATGC AAGGGCTATGGCACAGCCCCCAACACGTTGGCGGAGTACGCGCTGAAGCAGTTCAACAACCTGGATTTCATCGACGTCTCGGTGATTGATGGTTACAACG TCCCGATGGAGTTCAGCTCCACCTCGGGGAGCTGCAAAAGGGTGATCCGGTGTGCGGCCGACATCTTGGGCCAGTGCCCCCAGCAGCTGAAGGTCCCGGG AGGTTGTAACGGGCCGTGTCCCGTGTTTAAGACGGAGGAGCATTGTTGTAACTCGGGGCGCTGCGGTCCGACGAATTATTCGAGGTTTTTCAAGGATAGG TGCCCTAATGCTTATAGTTACCCTAAGGATGATCCGACGAGCACTTTCACTTGCCCTTCTGGGACTAATTATAAGGTTGTTTTCTGTCCTTAG
AA sequence Show only first row Show all	>Lus10006302 pacid=23178377 polypeptide=Lus10006302 locus=Lus10006302.g ID=Lus10006302.BGIv1.0 annot-version=v1.0 MASLSLKATISLLAIAILTTSLTISTNAARFDITNKCPYTVWAASVPVGGGRQLNSGQTWTIDAPPGTAQARIWARTNCRFDASGRGKCQTGDCGGVLQC KGYGTAPNTLAEYALKQFNNLDFIDVSVIDGYNVPMEFSSTSGSCKRVIRCAADILGQCPQQLKVPGGCNGPCPVFKTEEHCCNSGRCGPTNYSRFFKDR CPNAYSYPKDDPTSTFTCPSGTNYKVVFCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006302 [exp]	0	1
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	4.5	0.8185
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	5.3	0.8048
AT3G14130			Aldolase-type TIM barrel famil...		Lus10008133 [exp]	6.3	0.7375
					Lus10039778 [exp]	12.0	0.7904
AT5G25930			Protein kinase family protein ...		Lus10034976 [exp]	13.7	0.7297
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	14.5	0.7510
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10018621 [exp]	18.1	0.7509
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	18.2	0.7497
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031161 [exp]	26.8	0.6900
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	27.1	0.7246

Compare expression of checked genes

Lus10006302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.