Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 520 / 8e-175 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67360 511 / 1e-171 ARA12 Subtilase family protein (.1) AT2G05920 492 / 3e-164 Subtilase family protein (.1) AT3G14067 491 / 1e-163 Subtilase family protein (.1) AT3G14240 489 / 9e-163 Subtilase family protein (.1) AT4G34980 474 / 6e-157 SLP2 subtilisin-like serine protease 2 (.1) AT2G04160 454 / 3e-149 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G01900 449 / 3e-147 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G59810 447 / 2e-146 ATSBT5.4 Subtilase family protein (.1) AT5G51750 444 / 2e-145 ATSBT1.3 subtilase 1.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029570 [exp] 1110 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 1106 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 1059 / 0 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 1043 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10006310 [exp] 1014 / 0 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10002242 [exp] 1004 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 997 / 0 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10029580 [exp] 985 / 0 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10028893 [exp] 753 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 807 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 791 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 789 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 747 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 734 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 538 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 529 / 2e-178 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.006G141200 [exp] 501 / 1e-167 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 491 / 2e-163 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.005G145300 [exp] 488 / 2e-163 AT5G67360 932 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10006303 pacid=23178370 polypeptide=Lus10006303 locus=Lus10006303.g ID=Lus10006303.BGIv1.0 annot-version=v1.0 ATGGAGATGAAAGCCTTTCTCTGCATTTCCGTTACTTTAGCTTCTGCATTATTCTTCTCCTCTTTCCAGGAAGCATCAGCTTCTGGCAAAAGCAAATTAG ACACTTACATTGTGTTTCTAGAGAAACCAGAAAGCCTACTATCCACACAATCAACTGATATAAATGACTGGTACAACACGTTCCTTCCCGAAACTACCTT GCAAAGCTCGAGCCAAGAACAGCGTATGGTGCATTCGTATCACAATGTGGCTACAGGCTTCGCTGCTAGGCTTACACCAGAAGAAGCCAAAGCAATGGAG AAGAAACAAGGGTTTGTTTCAGCAAGAGTTGAGAGATCCTTGTCTCTACATACAACTCACACTCCAGAGTTCTTAGGTCTGCTGCAAAATGTAGGCAGTA CTAATTATTATAACTCTTCAAATCTTGGCAAAGGAGTTATTATAGGTATGATTGACAGTGGAATCAAGTACAATCATCCTTCGTTTCACGACCAAGGTAT GCCTCCACCTCCTGCAAGATGGAAAGGCAAGTGTGAGATCGAGACTTGTAACAAGAAGCTCATCGGTGCTAGAAGCTTTGTCACTCCGGGGAATCTTACC GAAGAGATTCTCCATGGAACTCATACTGCTGGGGAAGCTGCTGGGAGTGGTGTGGAAGGTGCCAATGTGTTTGGACAAGCTAATGGGACGGCGATGGGGA TCGCCCCATTAGCCCACTTGGCGATGTACAAGGTCTGTGTAACTAGTTTTGAATGCTTTGAGAGTAACGTATTGGCAGGAATGGATGCTGCTATAGAAGA CGGTGTTGATGTGCTTTCGATGTCCGTTGGAGCTCCTAGAGATAACTTCTACGACGATGCTGTTGCATTGGGTGCATTCAGAGCCATTCAGAATGGCATC TTTGTGAGTTGCTCAGCTAGCAACAACGGACCAGGCAGCTCTTCTGTACAGAACGAGGCGCCTTGGATATTAACAGTTGGAGCAAGTACAATTGATAGGG AAATCATGACAACAGTGACGTTAGGTAACAATTTGAAATTTCATGGCCAATCCCTTTTCCAGCCTAAGGACTTTCTTCCACAACAATTTCCATTTTTCGA TCCTGGCACGAGCAGCAATGCTTCAGCAGCATTTTGCGAAGAAGGATCACTGAAGAACATTGATGTTACAGGCAAGATTGTACTATGCCAGACTGGTAAG ATTGGAACTGTCGAAAAGGGAGTAGAAGTGAAAAAGAATGGCGGAGTAGGAATGATCGTGATCAATAGTTTGGCCAGAGGGCTTTTTACTACACCGGAAG CTCATGTCCTTCCTGCATCACATATTAATTACAATGATGGATTGGGAATCAGAGCTTACTTGAACTCCACGTCATCTCCTACAGCAGCAATTTCGTTCCA AGGTACCGTAATTGGCAAGTTGAGGGCTCCACAAGTAGCCTTGTTCTCGTCTCGAGGTCCAAGCAAACAAAGCCCCGGGATCCTGAAACCGGACATTATC GGTCCTGGGGTGAGCATTCTAGCTGCTTGGGGAGAGTCGGTTGATAATAAAACCGATTCGTTCAATATAATCTCGGGAACTTCAATGGCTTGCCCACATC TTAGCGGCGTAGTAGCTTTGATCAAGGCAGTTCATCCAGACTGGTCTCCTGCTGCCATAAAGTCAGCCATTTTAACGACTGCTTACACAGTCGACCGAAT TGGCAAGCCAATCTCCGATCATCAGAATTCCCCTGCTATTGTATTCGATATCGGTGCTGGCCATGTGGACCCAACAAAAGCTTTCAATCCAGGCTTGGTA TACGACATCCAACCGGATGATTACATCGGCTATCTATGCGGTTTGGGCTATAACGACACGCAAGTAAACATAATCGTGCAGAGGAAAGTGAAGTGCTCGA ACGAATCTGCGATACCTGAGGCTCAACTGAACTATCCTACGTTTTCTATCTCGCTAGGCTCTAGTGATCAACAGACATATACCAGAACGGTTACTAACGT TGGCATCGCTGACTCAACTTACAGCAGCACGGTATTGGCACCGGAAGGTGTTGAAGTTAAAGTCGAGCCAAGTGAGATTAAGTTCAAAGAGCTGAAACAG AAAGCAACATATTCTGTAACGTTCAGCAGAGTGGGAAACGCGACTGCCACGGTAGGTCAAGGTTCCTTGGTATGGTCATCAGCTGATGAACTGTACAAAG TTACAAGCAGAATTGCTGTTGTTTTTGCTTGA
AA sequence Show only first row Show all	>Lus10006303 pacid=23178370 polypeptide=Lus10006303 locus=Lus10006303.g ID=Lus10006303.BGIv1.0 annot-version=v1.0 MEMKAFLCISVTLASALFFSSFQEASASGKSKLDTYIVFLEKPESLLSTQSTDINDWYNTFLPETTLQSSSQEQRMVHSYHNVATGFAARLTPEEAKAME KKQGFVSARVERSLSLHTTHTPEFLGLLQNVGSTNYYNSSNLGKGVIIGMIDSGIKYNHPSFHDQGMPPPPARWKGKCEIETCNKKLIGARSFVTPGNLT EEILHGTHTAGEAAGSGVEGANVFGQANGTAMGIAPLAHLAMYKVCVTSFECFESNVLAGMDAAIEDGVDVLSMSVGAPRDNFYDDAVALGAFRAIQNGI FVSCSASNNGPGSSSVQNEAPWILTVGASTIDREIMTTVTLGNNLKFHGQSLFQPKDFLPQQFPFFDPGTSSNASAAFCEEGSLKNIDVTGKIVLCQTGK IGTVEKGVEVKKNGGVGMIVINSLARGLFTTPEAHVLPASHINYNDGLGIRAYLNSTSSPTAAISFQGTVIGKLRAPQVALFSSRGPSKQSPGILKPDII GPGVSILAAWGESVDNKTDSFNIISGTSMACPHLSGVVALIKAVHPDWSPAAIKSAILTTAYTVDRIGKPISDHQNSPAIVFDIGAGHVDPTKAFNPGLV YDIQPDDYIGYLCGLGYNDTQVNIIVQRKVKCSNESAIPEAQLNYPTFSISLGSSDQQTYTRTVTNVGIADSTYSSTVLAPEGVEVKVEPSEIKFKELKQ KATYSVTFSRVGNATATVGQGSLVWSSADELYKVTSRIAVVFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006303 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	5.1	0.9217
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10009489 [exp]	5.3	0.9124
					Lus10008289 [exp]	7.6	0.9197
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	9.2	0.9194
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10041536 [exp]	11.4	0.9130
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007066 [exp]	13.1	0.8654
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	13.3	0.9130
AT2G24960			unknown protein		Lus10042421 [exp]	16.6	0.9129
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	18.1	0.9118
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10026188 [exp]	18.5	0.9098

Compare expression of checked genes

Lus10006303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.