Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16280 260 / 4e-82 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT2G47310 134 / 5e-35 flowering time control protein-related / FCA gamma-related (.1) AT1G03457 112 / 2e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G03110 104 / 2e-24 AtRBP-DR1 RNA-binding protein-defense related 1 (.1.2) AT4G00830 49 / 5e-06 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G64200 47 / 1e-05 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT5G51300 44 / 0.0002 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029574 [exp] 447 / 2e-152 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 325 / 1e-105 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10017070 [exp] 315 / 7e-102 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4) Lus10005926 [exp] 100 / 1e-22 AT4G03110 548 / 0.0 RNA-binding protein-defense related 1 (.1.2) Lus10040910 [exp] 74 / 2e-14 AT4G03110 326 / 5e-109 RNA-binding protein-defense related 1 (.1.2) Lus10003957 [exp] 48 / 6e-06 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10023802 [exp] 48 / 8e-06 AT5G64200 217 / 1e-68 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10031844 [exp] 45 / 0.0001 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 44 / 0.0001 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147900 [exp] 311 / 6e-99 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.002G192900 [exp] 192 / 3e-56 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1) Potri.014G135540 [exp] 108 / 4e-26 AT4G03110 513 / 0.0 RNA-binding protein-defense related 1 (.1.2) Potri.002G214000 [exp] 104 / 1e-24 AT4G03110 506 / 4e-179 RNA-binding protein-defense related 1 (.1.2) Potri.012G061600 [exp] 50 / 6e-07 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.005G165400 [exp] 50 / 8e-07 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.003G023800 [exp] 49 / 2e-06 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.015G057400 [exp] 48 / 3e-06 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.002G095800 [exp] 48 / 3e-06 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.014G104500 [exp] 45 / 4e-05 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10006304 pacid=23178369 polypeptide=Lus10006304 locus=Lus10006304.g ID=Lus10006304.BGIv1.0 annot-version=v1.0 ATGATTCGGCCTCTCTTTGAGAAAGAAGGGAATGTCATTGAGGTTGCCTTGATCAAAGACAAAAGAACTGGTCAGCAGCAAGGTTGTTGTTTTGTGAAAT ATGCAACTATAGAAGAGGCTGATAGGGCTGTAAGAGCTTTGCACAATCAGCATACTCTACCTGGAGGAGTTGGCCCAATTCAAGTCCGATATGCAGATGG AGAACGAGAACGCCTAGGTGCTGTCGAGTACAAGTTGTTTGTCGGGTCTCTAAATAAGCAGGCTACAGAAAAGGAAGTTGAGGAAAGAGATACGGCACTA GCAGCTATAAATGCTCTTAATGGAACTTATACCATGAGAGGCTGTAATCAACCACTTACTGTCCGTTTTGCTGATCCGAAGAGACCAAAACCTGGAGATT CAAGCTTGCCAAGACGTGGCGGTCCTGGTTTTGAAGATCCAGGTTTTGGATCTCAGTTTCAAGTGCCAATGCCAAGACCTGAACACAACTATGGTGGATC TATGGGTGATCGTGCCCCTCCTAATCCCTGGCATCCAATTACTCCAAACCAGACAGGGCCTCCTCCCGGTGCTGGTGTTCAAGGCCTGGGGAATTCGTTG CCTCCTTTTAATCAGGGTGGCTTTGGTGGCCCTCCTGATGGCCCTTCTCAAGAAGCCTTTTTCTCTCCTGGAAATCGGCCATTGCAGCAAGTGGCACCCA TTGGCCAGCAGATACAACCAACGCAGAAGCCTGTTAAGTCGCCTCAAAATTTACAACCTTCCCTTCCATTGAACCCTCATTCTGCATCATCTTACCCACA AACACAAATGCCCCATCCTAGTCAGCAGAACATGTCGTCACAACAGTTGCACGGTTTCACCGGCCCTGCTGTCTCTGCTACTGCACCGACGAACCCCTTA ACCATCAGTTTGCAATCCCAACCAAAGCCAGGTGCCCCAAATCCACCAAAGCAGCATCCTCAACCTTTGCAGCAGCAACCTCAACCTTTGCAGCAGCAAT CCCCTTCCCAGTTAGCTCAGATGTTATCTCAGCAAAAGCAAACTCTACAAGCGAGCTTTCAGTCTTCTCAGCAAGCTTTCTCTCAGTTGCAACAGCAAGT TCAGATGATGCAATCATCATCCATGCATCAAAATCCCCAGGCGGCCAGACCACAGGCATGA
AA sequence Show only first row Show all	>Lus10006304 pacid=23178369 polypeptide=Lus10006304 locus=Lus10006304.g ID=Lus10006304.BGIv1.0 annot-version=v1.0 MIRPLFEKEGNVIEVALIKDKRTGQQQGCCFVKYATIEEADRAVRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEERDTAL AAINALNGTYTMRGCNQPLTVRFADPKRPKPGDSSLPRRGGPGFEDPGFGSQFQVPMPRPEHNYGGSMGDRAPPNPWHPITPNQTGPPPGAGVQGLGNSL PPFNQGGFGGPPDGPSQEAFFSPGNRPLQQVAPIGQQIQPTQKPVKSPQNLQPSLPLNPHSASSYPQTQMPHPSQQNMSSQQLHGFTGPAVSATAPTNPL TISLQSQPKPGAPNPPKQHPQPLQQQPQPLQQQSPSQLAQMLSQQKQTLQASFQSSQQAFSQLQQQVQMMQSSSMHQNPQAARPQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006304 [exp]	0	1
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012076 [exp]	1.4	0.9061
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	3.9	0.8988
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	8.8	0.8583
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	9.5	0.8710
AT3G44370			Membrane insertion protein, Ox...		Lus10026414 [exp]	13.2	0.8529
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	14.0	0.8998
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10020230 [exp]	14.5	0.8630
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10043175 [exp]	20.9	0.8783
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10037811 [exp]	21.6	0.8900
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	21.7	0.8761

Compare expression of checked genes

Lus10006304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.