Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16280 67 / 2e-13 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT1G44910 50 / 3e-07 ATPRP40A pre-mRNA-processing protein 40A (.1.2) AT3G19670 48 / 9e-07 ATPRP40B pre-mRNA-processing protein 40B (.1) AT2G47310 47 / 3e-06 flowering time control protein-related / FCA gamma-related (.1) AT3G19840 40 / 0.0008 ATPRP40C pre-mRNA-processing protein 40C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029574 [exp] 188 / 4e-56 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 73 / 3e-15 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10017070 [exp] 71 / 1e-14 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4) Lus10033770 [exp] 50 / 3e-07 AT1G44910 682 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10018659 [exp] 49 / 9e-07 AT1G44910 834 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10006142 [exp] 47 / 2e-06 AT3G19670 648 / 0.0 pre-mRNA-processing protein 40B (.1) Lus10007723 [exp] 47 / 3e-06 AT1G44910 828 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10012908 [exp] 41 / 0.0004 AT3G19840 673 / 0.0 pre-mRNA-processing protein 40C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147900 [exp] 83 / 9e-19 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.002G192900 [exp] 57 / 7e-10 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1) Potri.009G085400 [exp] 50 / 2e-07 AT1G44910 651 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.001G289800 [exp] 49 / 4e-07 AT1G44910 667 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.014G013100 [exp] 48 / 1e-06 AT1G44910 808 / 0.0 pre-mRNA-processing protein 40A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain
Representative CDS sequence Show only first row Show all	>Lus10006305 pacid=23178353 polypeptide=Lus10006305 locus=Lus10006305.g ID=Lus10006305.BGIv1.0 annot-version=v1.0 ATGCCACAACAAACGGTTGCTAGTTCTCCGGCCACTACACTACCATTAGACGTGCCTCCAACTACCAAAACTGCCCCATTATCACAGGCTAAGCACAGTA ACTGGACCGAGCATACTTCTCCTGAAGGATTCAAGTACTATTACAACAATGTGACGGGGGAAAGCCGGTGGGAGAAGCCAGAAGAGTTGATATCAACTGA ACAACAGCAATCACAAACAAAGCCTTCAGCTCAACTTCCTCAAGCTCAGCAGAACCCCGGAGCTCCACAGAACTATCAAGCCGTACAAGGACAATCAATA CGCCCGGGAGCTCCACAGAACCAGCAAGCAGGTCAAGGAAATCCAATGCAGTTTCCTGCACAGTTCCAGACACAATATCGTCAACAGCATCCTACTCAAC AACCTTCTTTTCATTCAGGGGAGCATGGTTATGCACAGATGCCCATCCCTGCTAACTCAGCTAACGATCAAACAAAGCTCCAGGATCTTGAAGCAGACAC CAACATGCGCGAAGTGAACTTCAGCCTCGCCTAA
AA sequence Show only first row Show all	>Lus10006305 pacid=23178353 polypeptide=Lus10006305 locus=Lus10006305.g ID=Lus10006305.BGIv1.0 annot-version=v1.0 MPQQTVASSPATTLPLDVPPTTKTAPLSQAKHSNWTEHTSPEGFKYYYNNVTGESRWEKPEELISTEQQQSQTKPSAQLPQAQQNPGAPQNYQAVQGQSI RPGAPQNQQAGQGNPMQFPAQFQTQYRQQHPTQQPSFHSGEHGYAQMPIPANSANDQTKLQDLEADTNMREVNFSLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	0	1
AT2G25970			KH domain-containing protein (...		Lus10004446 [exp]	1.7	0.9380
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026268 [exp]	3.0	0.8941
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	3.0	0.9194
					Lus10027730 [exp]	4.2	0.9354
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	7.1	0.8888
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	8.8	0.8912
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	9.2	0.8909
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10037923 [exp]	10.6	0.9087
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	11.2	0.8883
AT5G64160			unknown protein		Lus10015845 [exp]	13.0	0.8760

Compare expression of checked genes

Lus10006305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.