Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 520 / 1e-171 ARA12 Subtilase family protein (.1) AT1G04110 513 / 1e-168 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 489 / 1e-159 Subtilase family protein (.1) AT3G14067 487 / 1e-158 Subtilase family protein (.1) AT3G14240 470 / 4e-152 Subtilase family protein (.1) AT4G34980 468 / 1e-151 SLP2 subtilisin-like serine protease 2 (.1) AT1G01900 463 / 2e-149 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 451 / 5e-145 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G51750 444 / 5e-142 ATSBT1.3 subtilase 1.3 (.1) AT5G59090 436 / 1e-139 ATSBT4.12 subtilase 4.12 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002244 [exp] 1466 / 0 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 1170 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 1168 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 1075 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10002242 [exp] 1045 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10006310 [exp] 1021 / 0 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10029580 [exp] 1008 / 0 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 1002 / 0 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10028893 [exp] 759 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113700 [exp] 810 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 803 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 781 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 754 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 750 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 560 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 530 / 4e-175 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.006G141200 [exp] 501 / 4e-164 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 488 / 2e-160 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 489 / 2e-159 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10006306 pacid=23178365 polypeptide=Lus10006306 locus=Lus10006306.g ID=Lus10006306.BGIv1.0 annot-version=v1.0 ATGTCTTGCCCACATCTTAGTGGTGTTGCGGCTGTAATCAAGGCAGTGCATCCAAACTGGTCTCCTGCTGCCATAAAGTCGGCCATTTTAACCACTGCTT ACATAGTTGACCAAAGTGGCAAGCCAATCTCCAATGCGCAAGATACCCCTGCTACTGTCTTTGATATGGGTGCTGGCCATGTCAACCCACCAAAAGCTTT CAGTCCTGGGTTGGTTTATGATATCCAACCGGATGATTACGTTGCGTATATCTGCAGCTTGGGTTACAATGACACACAAGTAAGAATGATCGTGCAGCGA AACGTAAAATGCTCAAACGAGTCTTCTATACCTGGTGCTCAACTGAACTACCCAACATTTTCTATCTCACTGGGTCCCAGTTCACAAACCCATACCAGAA CAGTCACTAATGTTGGTATGCCTGACTCAACTTACACTAGCAAGGTATTCGCACCAGATGGTGTGGATGTTAAAGTTGAACCAAGTGAGTTTAAGGTCAA AGAGCTGGAAGAGAAAGCAACATATTCCATAACATTCAGCAGAGTGGGACATGTGACAGGAACTGTAAGCCAAGGTTCGTTGGTGTGGTCATCAGCTGAT GCTCGCTACAATGTAGCGAGCACAATTGTAGTGGAAGCTTCAGTTTCTGGAAAAACTAACTTATACACTTACATTGTGTTTCTAGAGAAACCAGAGAGCC TGTTATCCACTGATTTTGATTTAAACGGATGGTACCAAACATTCCTTCCTGAAACTGTGTTAAGCTCGAGCCAGGAGCAGCGCGTGGTGCATTCATATCG AAATGTGATCACGGGCTTTGCTGCTAAGCTTACACCAGAAGAAGCAATAGCAATGGAGCAGAAGGATGGATTTGTGTCAGCAAGAGTTGACAGAACCGTG TCTCTACATACAACTCACACTCCCAAGTTCTTGGGTCTGCAGCAGAATCTAGGAGCTCGTTGGAACTCTTCAAATCTTGGAAAAGGAGTGATCATTGGTC TTGTTGACAGTGGCATCAAGCACGACCATCCTTCGTTTCGCGACGAAGGTATGCCTCCACCTCCTGCAAAATGGAAAGGCAAGTGTGAGGTCAACGGGAA GAAGACTTGTAACAACAAGCTCATCGGTGCTAGAAGCTTTCCCTCTCCGGGGAATCTTTCTGAAGATTTTTTCCATGGAACTCATACTGCTGGAGAAGCT GCTGGAAGTGCTGTAGAAGGTGCCAATTTTTTTGGACAAGCTAATGGGACAGCGATGGGGATCGCCCCATTTTCCCACTTGGCGATGTACAAGGTATGTG GAATAGGTGATTGCACTGAAAGTTCGGTATTGGCAGCCATGGATGCTGCTATAGAGGATGGTGTTGATGTGCTTTCACTGTCACTTGGAATTTCATCAGA GCATCTTTATGATGATGTAATTGCATTAGGTGCATTCAGAGCCATGCAAAATGGTATCTTTGTGAGCTGCTCAGCTGGCAACAGTGGACCATTTAGCTCT TCCTTAGATAATGAGGCACCTTGGATTCTAACAGTTGGAGCAAGTACCATTGATAGGGATATCAGGGCAACAGTGACATTAGGTAACAATGAGAAATTTC ACGGCCAATCCCTTTTCCAGCCTAAGGACTTCCATCCTCAGCAATTACCATTTGTCGATGCTGGCACGAGCAGCAATGCTTCAGCAATATTTTGTGACGA AGGATCACTAAATAACATTAATGTTACAGGCAAGATTGTTCTATGCCAGACTGGAGGCAGGACTCATATTATTGACAAAGGGGTAGAAGTAAAAAACAAT GGTGGAGTAGGAATGATCATAATCAATAACTTGGAAGAAGAGGGGTTTTTCACTGAACCGTTAGCCCATGTCCTTCCTGCATCACACATAAATTACAATG ATGGATTGGGAATCAGAGCTTACTTGAATTCCACGTCATCTCCTACAGCAGCAATCTCATTCCAAGGTACCGTGATTGGCAAGTTGAGTGCTCCAAAAGT AGCCTTGTTCTCATCTAGAGGTCCCAGCAGAAAAACTCCAGGGATCCTGAAACCTGACATCATTGGTCCTGGGGTGAGCATTTTAGCTGCCTGGGGAGGG TCAGTTGACAATAGTACAAATTCATTCTATCTAATGTCGGGAACTTCGATGTCTTGCCCCCATCTTAGCGGTGTTGCAGCAGTAATCAAGGCAGTGCATC CAAACTGGTCTCCTGCTGCCATAAAATCAGCCATTTTAACCACTTCTTACACAGTGGATAGAAGTGGCAAGCCAATCTCCAATGAAGAGAATTCCCTAGC TACTGCCTTTGATATGGGTGCTGGCCATGTGAACCCACCAAAAGCTTTGAGTCCTGGCTTGGTGTATGATATCCAACCGGATGATTACGTTGGCTATCTA TGTGGTTTGGGTTACAATGACACGCAGGTACGCATGATTGTGCAGCGAAAAGTGAAGTGCTCGAATGAATCTGCTATACCAGAGGCTCAACTGAACTACC CTACATTTGCTATCTCGTTAAGTTCTACTCGACAAACCTATACCCGAACAGTTACTAATGTTGGTCTGCCTAGCTCAACTTACACAAGCAAGATATTCGC ACCAGAAGGCGTGGATGTTAAAGTCGCACCAAGTGAGATTAAGTTCAAGGAGCTTCAAGAGAAAGCAGCATATTTCATAACATTCAGCAGAGTGGGAAAT GTGACAGGGGCTGTAAGCCAAGGTTCCTTGGTGTGGTCATCAGCTGATGCTCGCTACAATGTCGTCAGCACTATTGCTGTGCAAGTAGCATTCAGTATTA GAAAAGGAGAAGGAAATCTGCATCCCATTGCAAGAAAGGAGAAGGAACCTGAAGCATTGAGACCATATAGCATTGGTTCGTGCTGCAATGGGATATTTCG GAACTTTGATTTTGGAGGTGGTAGTGGTAGAGCTGCCAAGCTGCCAATAGTTATCGGTGAGCAAATCTTCCGGTCACTTGCTGGTAGTGTATGCTTGAAA TTCATGGCTCGTAAAAGTGCAGACATGTAG
AA sequence Show only first row Show all	>Lus10006306 pacid=23178365 polypeptide=Lus10006306 locus=Lus10006306.g ID=Lus10006306.BGIv1.0 annot-version=v1.0 MSCPHLSGVAAVIKAVHPNWSPAAIKSAILTTAYIVDQSGKPISNAQDTPATVFDMGAGHVNPPKAFSPGLVYDIQPDDYVAYICSLGYNDTQVRMIVQR NVKCSNESSIPGAQLNYPTFSISLGPSSQTHTRTVTNVGMPDSTYTSKVFAPDGVDVKVEPSEFKVKELEEKATYSITFSRVGHVTGTVSQGSLVWSSAD ARYNVASTIVVEASVSGKTNLYTYIVFLEKPESLLSTDFDLNGWYQTFLPETVLSSSQEQRVVHSYRNVITGFAAKLTPEEAIAMEQKDGFVSARVDRTV SLHTTHTPKFLGLQQNLGARWNSSNLGKGVIIGLVDSGIKHDHPSFRDEGMPPPPAKWKGKCEVNGKKTCNNKLIGARSFPSPGNLSEDFFHGTHTAGEA AGSAVEGANFFGQANGTAMGIAPFSHLAMYKVCGIGDCTESSVLAAMDAAIEDGVDVLSLSLGISSEHLYDDVIALGAFRAMQNGIFVSCSAGNSGPFSS SLDNEAPWILTVGASTIDRDIRATVTLGNNEKFHGQSLFQPKDFHPQQLPFVDAGTSSNASAIFCDEGSLNNINVTGKIVLCQTGGRTHIIDKGVEVKNN GGVGMIIINNLEEEGFFTEPLAHVLPASHINYNDGLGIRAYLNSTSSPTAAISFQGTVIGKLSAPKVALFSSRGPSRKTPGILKPDIIGPGVSILAAWGG SVDNSTNSFYLMSGTSMSCPHLSGVAAVIKAVHPNWSPAAIKSAILTTSYTVDRSGKPISNEENSLATAFDMGAGHVNPPKALSPGLVYDIQPDDYVGYL CGLGYNDTQVRMIVQRKVKCSNESAIPEAQLNYPTFAISLSSTRQTYTRTVTNVGLPSSTYTSKIFAPEGVDVKVAPSEIKFKELQEKAAYFITFSRVGN VTGAVSQGSLVWSSADARYNVVSTIAVQVAFSIRKGEGNLHPIARKEKEPEALRPYSIGSCCNGIFRNFDFGGGSGRAAKLPIVIGEQIFRSLAGSVCLK FMARKSADM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006306 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007852 [exp]	4.6	0.9519
AT5G36930			Disease resistance protein (TI...		Lus10010987 [exp]	6.0	0.9513
AT1G27180			disease resistance protein (TI...		Lus10007831 [exp]	6.9	0.9410
					Lus10034389 [exp]	9.0	0.9234
					Lus10035048 [exp]	9.8	0.9386
AT5G22390			Protein of unknown function (D...		Lus10004863 [exp]	10.7	0.9059
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	11.0	0.9372
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10000180 [exp]	13.9	0.9355
					Lus10016134 [exp]	14.3	0.8858
AT4G37445			unknown protein		Lus10001408 [exp]	16.9	0.9301

Compare expression of checked genes

Lus10006306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.