Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 528 / 9e-178 ARA12 Subtilase family protein (.1) AT1G04110 518 / 7e-174 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT3G14240 501 / 5e-167 Subtilase family protein (.1) AT2G05920 487 / 7e-162 Subtilase family protein (.1) AT4G34980 486 / 1e-161 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 485 / 7e-161 Subtilase family protein (.1) AT5G51750 473 / 4e-156 ATSBT1.3 subtilase 1.3 (.1) AT1G01900 471 / 2e-155 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 461 / 2e-151 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 448 / 1e-146 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006310 [exp] 1178 / 0 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10029580 [exp] 1142 / 0 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10002242 [exp] 1122 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 1075 / 0 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 1058 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 1050 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 1044 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 1043 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10028893 [exp] 756 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113700 [exp] 813 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 811 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 790 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 754 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 746 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 558 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 534 / 4e-180 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.004G173900 [exp] 506 / 4e-169 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.006G141200 [exp] 504 / 3e-168 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 500 / 7e-168 AT5G67360 932 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10006307 pacid=23178380 polypeptide=Lus10006307 locus=Lus10006307.g ID=Lus10006307.BGIv1.0 annot-version=v1.0 ATGAAATCCTATCTCCTGATTTCCCTAACTTTGACTTCCACATTCATATCCTTCCTCTCAGCCAAAAGTGATGACTTGAACACTTACATTGTGTTTCTGG AGAAACCAGAAGGCCTAACTCTCACACAGTCGAGAGATGATTTACATGGCTGGTACAACACCTTCCTTCCCGAAACAACTACCTTAAGCTCGAACGAGGA TCAACAGCGTGTGGTGCATTACTATCGAAATGTGATCACAGGCTTTGCTGCTAGGCTCACACCAGAGGAAGTCAAAGCAATGGAGCAGAAGGAAGGGTTT GTTTCAGCAAGAGTTGAGAGATCCTTGTCTCTACATACTACTTACACTCCCAAGTTCTTGGACCTGCAGCAAATTCTTCAGCAGAAAAATATAGGAGTAA ACCACTGGAGCTCTTCGAATCTCGGTAGAGGGGTGATCATTGGCCTTCTTGACAGTGGCATCAAGCATGACCACCCTTCGTTTCGCGACAAAGGTATGCC TCCACCACCTGCAAGATGGAAAGGGAAGTGTGAGATCAATGGTAAGATGACTTGTAACAACAAGCTCATCGGTGCTAGAAACTTTGTCTCTCCGGGGAAT CTTACCGAAGTGGCCTTCCATGGAAGTCATACTGCTGCAGAAGCTGCTGGGATTTCTGTGGAAGGTGCCAATGTGTTTGGACAAGCTAATGGAACTGCGA TGGGGATTGCACCGTTTTCCCACTTGGCGATGTACAAGGTTTGTAGAACTAGTGATGAATGCTTTGATACTAACATATTGGCAGGAATTGATGCTGCTAT CGAGGATGGTGTTGATGTGCTGTCGTTGTCGCTTGGATTTCCAAGCCATTCATATTATTCGTATGATGATGATGTTATTGCATTGGGTACATTCAGGGCC ATTCAAAATGGTATCTTTGTGACATGTTCAGCTGGCAACTTTGGACCAAATAGCATTTCTTTAGTAAATGAAGCACCTTGGATTCTAACAGTTGGAGCAA GTACCATCGATAGGGATATCCGGACAACAGTGACTTTAGGCAACAACGCCCAGTTTCATGGCCAGTCGAGTTTCCAGCCTAAGGACTTTCTTCTTCCACA GCGATTGTTGCCGATTGTCGATCCTGGCATGATGAGTAGAAATGAATCAGCAGCATTTTGTGTAGAAGGATCACTGAAGAACATTGATGTTAGAGGCAAG ATTGCTCTGTGCCAGGTGTGCGGCATCATTGAGGTCATCGATCAATGCCGCCACGTTGAGGCCATCGATCAAGGAAAAGAAGTCAAAAGAAATGGTGGAG TGGCCATGATTTTGATCAATGGTATGGCCCAGGGTTACACCTGTCGAGCTGAAGCCAATGTCCTCCCTGCATCAAACATCAACTACAAAGACGGATTGGA AATCAAAGCTTACTTGAACTCCACGTCATCCCCAACTGCAACAATCTCATTCCAAGGTACTTTGTTCGGAAAGTTGAGTGCTCCACAAGTAGCCTCGTTC TCGTCGAGAGGTCCCAGCAGACAAAGCCCCGGGATCCTGAAACCTGACATCATTGGTCCTGGGGTAAACATTCTAGGCGCTTGGGGAGAATCGGTCGACA ATAAAACCGATTCATTCAATATAATCTCGGGAACTTCGATGTCTTGCCCGCATCTTAGCGGTGTTGCAGCTATAATCAAGGCAATGCATCCAGACTGGTC ATCTGCTGCCATAAAGTCAGCCATCTTAACCACTGCTTACACAGTGGACCTTAGTGGCAAGCCAATCTCCAACGGGCATAATTCTCCTGCAACTGTCTTT GATATGGGTGCTGGCCATGTGAACCCACCAAAAGCTATGGATCCAGGCTTGATATATGATATCCAACCGGATGATTACGTTGCGTATATCTGCAGTTTGG GTTACAATGAGACACAAGTAAGAAGGATTGTGCAGCGCAAGGTGAAGTGCTCGGATGAATCTTCCATACCCGGTGCTCAACTGAACTACCCTACATTCTC TGTCTCACTGGGATCTGATCCCCAAACCCACACCAGAACAGTCACTAACATTGGCATGCCCGATTCAACTTACATCAGCAAGGTATTCCCACCAGAAGGT GTCTATGTTAAAGTCGAGCCAAGCGAGTTTAAGTTCAAGGAGGTGAAAGAGAAAGCAACGTATTCGATAACATTCAGCAGAGTTGGAAATGTGACGAGAA GTCTGAGCCAAGGTTCTTTGGTGTGGTCATCAGCTGATGATCGGTACAGCGTTGTGAGCGTAATTGCTGTGGTTTTTGTTTGA
AA sequence Show only first row Show all	>Lus10006307 pacid=23178380 polypeptide=Lus10006307 locus=Lus10006307.g ID=Lus10006307.BGIv1.0 annot-version=v1.0 MKSYLLISLTLTSTFISFLSAKSDDLNTYIVFLEKPEGLTLTQSRDDLHGWYNTFLPETTTLSSNEDQQRVVHYYRNVITGFAARLTPEEVKAMEQKEGF VSARVERSLSLHTTYTPKFLDLQQILQQKNIGVNHWSSSNLGRGVIIGLLDSGIKHDHPSFRDKGMPPPPARWKGKCEINGKMTCNNKLIGARNFVSPGN LTEVAFHGSHTAAEAAGISVEGANVFGQANGTAMGIAPFSHLAMYKVCRTSDECFDTNILAGIDAAIEDGVDVLSLSLGFPSHSYYSYDDDVIALGTFRA IQNGIFVTCSAGNFGPNSISLVNEAPWILTVGASTIDRDIRTTVTLGNNAQFHGQSSFQPKDFLLPQRLLPIVDPGMMSRNESAAFCVEGSLKNIDVRGK IALCQVCGIIEVIDQCRHVEAIDQGKEVKRNGGVAMILINGMAQGYTCRAEANVLPASNINYKDGLEIKAYLNSTSSPTATISFQGTLFGKLSAPQVASF SSRGPSRQSPGILKPDIIGPGVNILGAWGESVDNKTDSFNIISGTSMSCPHLSGVAAIIKAMHPDWSSAAIKSAILTTAYTVDLSGKPISNGHNSPATVF DMGAGHVNPPKAMDPGLIYDIQPDDYVAYICSLGYNETQVRRIVQRKVKCSDESSIPGAQLNYPTFSVSLGSDPQTHTRTVTNIGMPDSTYISKVFPPEG VYVKVEPSEFKFKEVKEKATYSITFSRVGNVTRSLSQGSLVWSSADDRYSVVSVIAVVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006307 [exp]	0	1
AT2G46640			unknown protein		Lus10005993 [exp]	1.4	0.9347
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10015307 [exp]	2.8	0.9046
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	3.9	0.8939
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	5.0	0.8666
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	6.9	0.8873
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	9.5	0.8614
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10028822 [exp]	10.5	0.8357
					Lus10015620 [exp]	10.6	0.8601
AT1G05140			Peptidase M50 family protein (...		Lus10035276 [exp]	12.0	0.8458
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10025196 [exp]	15.3	0.7741

Compare expression of checked genes

Lus10006307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.