Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36670 137 / 3e-35 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT3G18830 135 / 4e-34 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G20780 121 / 2e-29 AtPLT4 Major facilitator superfamily protein (.1) AT2G16120 120 / 2e-29 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 119 / 9e-29 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G18480 112 / 1e-26 AtPLT3 Major facilitator superfamily protein (.1) AT5G59250 83 / 8e-17 Major facilitator superfamily protein (.1) AT5G17010 82 / 3e-16 Major facilitator superfamily protein (.1.2.3.4) AT2G43330 78 / 5e-15 ATINT1 inositol transporter 1 (.1) AT4G04750 77 / 6e-15 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042339 [exp] 139 / 2e-35 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 128 / 6e-32 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10011287 [exp] 126 / 5e-31 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10026032 [exp] 124 / 2e-30 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 124 / 8e-30 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10011288 [exp] 121 / 3e-29 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10023640 [exp] 119 / 8e-29 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 119 / 8e-29 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 115 / 3e-27 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152300 [exp] 139 / 2e-35 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 138 / 3e-35 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 133 / 1e-33 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 122 / 5e-30 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 121 / 1e-29 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 121 / 2e-29 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 94 / 3e-20 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 81 / 3e-16 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.002G006200 [exp] 80 / 1e-15 AT4G35300 904 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.010G026500 [exp] 79 / 1e-15 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10006308 pacid=23178337 polypeptide=Lus10006308 locus=Lus10006308.g ID=Lus10006308.BGIv1.0 annot-version=v1.0 ATGTTCAACCGTTGCAAATTGATGATTCTCAATTCCATCAAGCAAATCAAAGTCCGCTCCCCAGTACCCTCCAACGGCGTCGTTTTCCTGTCATCCGTCG TCGCATTCCCCTTTTTCCTCCACGGATATGACGCGGCGATTATGATGGCGACAAATACGATCATAGAGGATTTGGGTCTGACCGTGGACCAAATCGACAC CTTTGTAACGTGGCTGAATAGATGGCCCCTTGCCGGAGGTGTCATCGTATCGGGTCTTGTGACCAATTTCGTTGGCCGGAATTACCCCGCTGCATTTGGG GGAGGTCTCTACACAATCGGGATCCTCATGTTGGCCTTCGCGCCTAGTTTCATAGTTGCTGCAATCGGCCGTGCATCGGCTAAGTTCGGCACTGGAATGG GTCTAGCCATGGGACCCATCTACATTGCCGAAATTGCACCGGCCAGCGCACGCAGCTTCATGGGCCATTCCCCTCAGGTGATGTTGGCCATGGGAATGGT GGCAGCCTACACAGTGCAGTTGGCATCCATACGAATCCCTACCGATATTGCTCTGAGGCTGATCGTTGGTCTTCCTGCGTTCCCTTCCTTGGCATTTACA GCCTTGTTATGTTGGTTACCGGATTCTCCATGCTGGCTCGTCATGCTGGGGAAGGTGGACAGCACGAAGGAGCTTCTCGAGGATTTTCGATATCACAAGG ATGAGGATGATGATGATGAGGAGGAGGAGGATGAAGTGGAGGCTAGGCTGAAGCAACTTAAAAAAGTTGCGGGCTTTGACCCAGACTGCACCGGGAACAA TGTTAGAGGAGCCCCCGGAAGGATTATCGGGGGTTGGGAAGTGTTATACAATATGTTCAATGGAGACCCTTTCTTTCGACCAATGATCAAGACGACCATC CTACTCGTCGCTCAGGAGGCTACATTTGAAGAATTGATCTTCCAAACCCTAGATGTGTCCCTGGAGTCGAATGCAGCCGGATGCTGCCTATCCATGTACA TAAGAGGAACCATGATATCCTGTATCAAACTATTCTCCACCATGCTATCAGCCCGTTGCGCGAATGGACCTGGCGGGCGCAGGGCATTGCTCATCACGAG CATCTTCCTAGTCGGGTGCGCACTCGGAGCGTTCAGTGCCACGCTTTACGCAGATGGGCGTGGTCATATTAGCCACGGGGTTGCGTTCCCGTTGTACATC ATGGAGATAGGGGTACTGGAGATTGCAGTAGGATTTGGATTGGGACCTTATCCCTGGATGTACGGTCCAGAGGCTTTCCCACTACCCATCCGAGCACCCT GTCTGGCTTTCTGCATCTGCTCACAGTTCGCCTTCCGTTTGATCGCGAATCTAGTTTTGCCGGTAGTTTATGCGCCCTTCGAGGGAATCTGGGCAGCTTT CCTCTTAGCTAGCGGGATCCAGGCACTTAGCCTGTTGCTATGTTGTCTATTTGTGAGGGATTCGACTGGCCAAATATTAGTAGACCGCATAGATTAG
AA sequence Show only first row Show all	>Lus10006308 pacid=23178337 polypeptide=Lus10006308 locus=Lus10006308.g ID=Lus10006308.BGIv1.0 annot-version=v1.0 MFNRCKLMILNSIKQIKVRSPVPSNGVVFLSSVVAFPFFLHGYDAAIMMATNTIIEDLGLTVDQIDTFVTWLNRWPLAGGVIVSGLVTNFVGRNYPAAFG GGLYTIGILMLAFAPSFIVAAIGRASAKFGTGMGLAMGPIYIAEIAPASARSFMGHSPQVMLAMGMVAAYTVQLASIRIPTDIALRLIVGLPAFPSLAFT ALLCWLPDSPCWLVMLGKVDSTKELLEDFRYHKDEDDDDEEEEDEVEARLKQLKKVAGFDPDCTGNNVRGAPGRIIGGWEVLYNMFNGDPFFRPMIKTTI LLVAQEATFEELIFQTLDVSLESNAAGCCLSMYIRGTMISCIKLFSTMLSARCANGPGGRRALLITSIFLVGCALGAFSATLYADGRGHISHGVAFPLYI MEIGVLEIAVGFGLGPYPWMYGPEAFPLPIRAPCLAFCICSQFAFRLIANLVLPVVYAPFEGIWAAFLLASGIQALSLLLCCLFVRDSTGQILVDRID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	0	1
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	1.0	0.9809
AT2G39530			Uncharacterised protein family...		Lus10031874 [exp]	1.4	0.9228
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028928 [exp]	2.2	0.8988
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	3.9	0.9051
AT1G47670			Transmembrane amino acid trans...		Lus10003339 [exp]	4.5	0.9011
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Lus10024035 [exp]	5.0	0.8598
					Lus10026092 [exp]	6.0	0.8915
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10018392 [exp]	11.5	0.8754
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	12.7	0.8876
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	12.7	0.8892

Compare expression of checked genes

Lus10006308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.