Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78010 636 / 0 tRNA modification GTPase, putative (.1) AT3G12080 75 / 5e-14 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2) AT5G39960 60 / 3e-09 GTP binding;GTP binding (.1) AT5G66470 50 / 3e-06 RNA binding;GTP binding (.1) AT1G30960 49 / 8e-06 GTP-binding family protein (.1) AT1G07615 45 / 0.0002 GTP-binding protein Obg/CgtA (.1) AT1G50920 44 / 0.0003 Nucleolar GTP-binding protein (.1) AT1G10300 43 / 0.0006 Nucleolar GTP-binding protein (.1) AT4G11160 43 / 0.0006 Translation initiation factor 2, small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029578 [exp] 948 / 0 AT1G78010 677 / 0.0 tRNA modification GTPase, putative (.1) Lus10027371 [exp] 72 / 4e-13 AT3G12080 874 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10002557 [exp] 72 / 6e-13 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10014289 [exp] 60 / 2e-09 AT5G66470 587 / 0.0 RNA binding;GTP binding (.1) Lus10025995 [exp] 59 / 5e-09 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014634 [exp] 55 / 1e-07 AT5G39960 634 / 0.0 GTP binding;GTP binding (.1) Lus10023046 [exp] 47 / 3e-05 AT1G30960 499 / 5e-176 GTP-binding family protein (.1) Lus10032427 [exp] 46 / 7e-05 AT1G30960 489 / 1e-171 GTP-binding family protein (.1) Lus10002558 [exp] 44 / 0.0002 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G092600 [exp] 700 / 0 AT1G78010 688 / 0.0 tRNA modification GTPase, putative (.1) Potri.009G054200 [exp] 69 / 5e-12 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Potri.007G021900 [exp] 56 / 5e-08 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1) Potri.004G230600 [exp] 55 / 1e-07 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1) Potri.001G239600 [exp] 49 / 1e-05 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.001G160800 [exp] 45 / 0.0002 AT1G30960 491 / 4e-173 GTP-binding family protein (.1) Potri.011G140100 [exp] 43 / 0.0006 AT1G17220 1160 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase CL0289 [flax] [poplar] FBD PF10396 [flax] [poplar] TrmE_N GTP-binding protein TrmE N-terminus
Representative CDS sequence Show only first row Show all	>Lus10006309 pacid=23178347 polypeptide=Lus10006309 locus=Lus10006309.g ID=Lus10006309.BGIv1.0 annot-version=v1.0 ATGGTTCTTCTCCTTCATCTTCCTCATCTTACTTTTACACACATCATCTTCAGACACCCAAAGTTCTCACCTTTCTCCATCCCTTTTTGTTTCCCACTTT TCCTTCGTCGTCGTCTCCAAACCCCTAATATTAGAAAGCCGCCGCATGCCAATTTTACCGCCGCCGCCAATTTGCTTCTCAACGGCAATGACCAGCGGTT CCAAGGATCAGATGATGAAAACAAATGTGTACAGAAACATTCAAGTTCAACCTCTGGTAGTACTATTGCTGCTATTGTCACTTCCATTGGTGGCCCTCCT GGAGCTGTGGGCATCGTTCGCCTATCTGGGCCATCGGCAGTGAACGTTGCTGCTAGTGTTTTTAAACCCACCAAGAAGAAGAGGAATGGTCGGTTATTGG GTGGTGGTTCTTGGCAACCTACCAGCCATGTTGTGGATTACGGTGTGGTTCTGGATCAGCAGGGGAACGTAATCGATGAGGTTCTTGTTGTGCCAATGTT GGCTCCAAGATCCTATACCCGTGAGGACGTGGTTGAGCTTCAGTGCCATGGGAGTGAAGTTTGTCTTAACCGGGTGTTGAGAGCCTGTCTGGAAGCTGGA GCTAGGCATGCAGAGCCAGGTGAATTTACCCTCCGTGCATTTTTGAATGGTCGCTTAGACCTCTCCCAAGCTGAAAATGTTGGGACGTTAGTTTCAGCCA AATCTGCCGCGGCTGCAGATGCAGCACTTGCTGGAATCCAGGGAGGCTTTGGTTTGCTGGTGAAATCATTAAGAATGCAATGCATTGAGTTGCTTACTGA GATTGAAGCTCGTCTGGACTTTGACGATGAGATGCCACCGATCGATCTGAAACTGATTGAGGAGAAGATACTAGCCATGTCACGGGATGTCGACAATGCT TTGGAGACTGCCAATTATGATAGGCTTCTGCAGTCTGGATTGCAGGTAGCGATACTAGGCCGCCCTAATGTGGGGAAATCAAGCCTTCTTAATGCTTGGA GTAAGAGTGAGAAGGCAATAGTTACAGACGTTGCTGGAACGACCAGGGATGTCGTGGAAGCTAACATTACAGTTGGTGGTATTCCCGTGACACTCCTCGA TACAGCTGGCATCAGAGAAACTAGCGATGTCGTCGAGAAGATTGGTGTAGAAAGATCTGAAGCTGTAGCCAAAGGTGCTGATATTATTATTTTGGTAATG AGTGCTTCTGATGGATGGACTCCAGAAGATGCAGCCCTTTTGCGGCTGATGGAGTCCAACAAGGAGAAAACTGGGTCATCAACTCCAATCATCCTGGTTG TCAACAAGATAGACTGTGCTCATCCATCTCTATCATCCGAATGGGACGGCAGACAAGCCTCCCAAAATCGTGTATTCACCTGTGCGGTTTCGGGTCAAGG AATTCGAGAGCTAGAAGCAGCGATCAAAGAGATCGTCGGTCTGAACAGGATTCCTGCTGGAGGTCGGAAATGGACAGTGAACCAGAGACAGTGCGAGCAA CTTTTACGAACACGGGAAGCGTTGAGGAGACTGAAGAAATCGATGGAAGAGGAAGTGCAACTGGACTTTTGGACAATTGATTTGAGAGATGCTGCATTGT CGCTTGGACAGATCACTGGAGAAGACATATCTGAAGAGGTTTTGTCCAACATTTTTGGCAAGTTCTGCATTGGTAAGTAG
AA sequence Show only first row Show all	>Lus10006309 pacid=23178347 polypeptide=Lus10006309 locus=Lus10006309.g ID=Lus10006309.BGIv1.0 annot-version=v1.0 MVLLLHLPHLTFTHIIFRHPKFSPFSIPFCFPLFLRRRLQTPNIRKPPHANFTAAANLLLNGNDQRFQGSDDENKCVQKHSSSTSGSTIAAIVTSIGGPP GAVGIVRLSGPSAVNVAASVFKPTKKKRNGRLLGGGSWQPTSHVVDYGVVLDQQGNVIDEVLVVPMLAPRSYTREDVVELQCHGSEVCLNRVLRACLEAG ARHAEPGEFTLRAFLNGRLDLSQAENVGTLVSAKSAAAADAALAGIQGGFGLLVKSLRMQCIELLTEIEARLDFDDEMPPIDLKLIEEKILAMSRDVDNA LETANYDRLLQSGLQVAILGRPNVGKSSLLNAWSKSEKAIVTDVAGTTRDVVEANITVGGIPVTLLDTAGIRETSDVVEKIGVERSEAVAKGADIIILVM SASDGWTPEDAALLRLMESNKEKTGSSTPIILVVNKIDCAHPSLSSEWDGRQASQNRVFTCAVSGQGIRELEAAIKEIVGLNRIPAGGRKWTVNQRQCEQ LLRTREALRRLKKSMEEEVQLDFWTIDLRDAALSLGQITGEDISEEVLSNIFGKFCIGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78010			tRNA modification GTPase, puta...		Lus10006309 [exp]	0	1
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10004569 [exp]	1.0	0.7272
AT3G59390			unknown protein		Lus10007819 [exp]	4.5	0.7100
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10021124 [exp]	13.6	0.7017
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	19.8	0.7251
AT5G17070			unknown protein		Lus10008757 [exp]	29.9	0.7239
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10026886 [exp]	32.1	0.6971
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Lus10037127 [exp]	32.8	0.7127
AT5G26990			Drought-responsive family prot...		Lus10002441 [exp]	36.9	0.6104
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	51.2	0.6894
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10022002 [exp]	56.2	0.6915

Compare expression of checked genes

Lus10006309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.