Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 520 / 1e-174 ARA12 Subtilase family protein (.1) AT1G04110 508 / 5e-170 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 483 / 1e-160 Subtilase family protein (.1) AT3G14240 483 / 2e-160 Subtilase family protein (.1) AT3G14067 481 / 2e-159 Subtilase family protein (.1) AT4G34980 470 / 2e-155 SLP2 subtilisin-like serine protease 2 (.1) AT2G04160 455 / 2e-149 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G01900 451 / 6e-148 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G59810 440 / 8e-144 ATSBT5.4 Subtilase family protein (.1) AT5G51750 440 / 1e-143 ATSBT1.3 subtilase 1.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029580 [exp] 1312 / 0 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 1174 / 0 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10002242 [exp] 1118 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 1086 / 0 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 1062 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 1061 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 1060 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 1055 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10008919 [exp] 736 / 0 AT5G67360 561 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113700 [exp] 805 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 803 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 777 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 743 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 736 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 528 / 1e-177 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 513 / 5e-172 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.005G145300 [exp] 493 / 2e-165 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 494 / 9e-165 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 488 / 3e-162 AT5G67360 994 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10006310 pacid=23178342 polypeptide=Lus10006310 locus=Lus10006310.g ID=Lus10006310.BGIv1.0 annot-version=v1.0 ATGAAATCCTATCTCCTGATTTCCCTCACTTTAACTTCCACATTCTTACATTTCTTCTCAGCCAAAGGTGATGACTTGAACACTTACATTGTGTTTCTGG AGAAACCAGAAAACTTAACTCTCACACAGTCAAGTGATGATTTACATGGCTGGCACAACACATTCCTTCCCGAAACTACCTTAACCTCGAACGAAAACCA ACAGCGCCTGGTGCATTCCTACCGCAATGTAATCACAGGCTTTTCAGCTAGGCTTACACCGGAAGAAGCCAAAGCAATGGAGCAGAAGGAAGGGTTTGTT TCAGCAAGAGTTGAGAGATCCTTGTCTCTACATACAACTCACACTCCAAAATTCTTAGGCCTGCAACAAATCCTACAGCAGCAAAAAAACGTAGGACCAC TAAACCATTGGTTCAGCCCTTCGAATCTCGGCAGAGGAGTGATCATAGGCATTATTGACAGTGGCATCAAGTATGACCATCCATCGTTTAGTGACCAAGG TATGCCTCCGCCTCCTGCAAGATGGAAAGGAAAGTGTGAGATAAATGGTAAAACGACATGTAACAACAAGCTCATCGGTGCTAGAAGCTTTCCCTATCCG GGGAATCTTTCTGAAGAGTTTCTCCACGGGACTCATACTGCTGCAGAAGCTGCTGGAACTTCCGTGGAAGGTGCCAATGTGTTTGGACAAGCTAACGGGA CTGCAATGGGGATCGCACCGTTTGCACACTTGGCGGTGTACAAGGTTTGTGCAAGAAGTAAAGAATGTGTGGAGAGTTCGGTATTGGCAGCAATGGATGC TGCTATAGAGGATGGCGTTGATGTGCTTTCGTTGTCGCTTGGATTGAAAACAGATCATTTGTATGATGATGTTGTTGCGTTGGGTGCATTCAGGGCCATT CAAAATGGAATCTTTGTGAGCTGCTCAGCTGGAAATTTTGGACCAGACAGTTATTCTGTAGTAAATGGGGCACCTTGGGTTCTAACAGTTGGAGCAGGTA CCGTTGATAGGGATATCAGGACAACGGTAACATTAGGAAAAAATTTGCAGTTTCATGGCCAATCCAGTTTCCAACCTGAGGACTTTCTTACACAGCCATT GCCGATCGTCGAAGCTAGCATGATAAGTAGCAATGCATCAGCAGCATTTTGTGCAGAAGGATCACTGAAGAACACTGACGTTAGAGGCAAGATTGTTCTG TGCCAGGGGAGCCGCCTCATGGAAGGCATCAATCAAGGAAAAGAAGTTAAAGAAAATGGTGGAGTAGCAATGATCTTGATCAATGATTTGGCACAAGGTT ACACTACTCAAGCTGAAGCCCATGTTCTTCCTGCATCAAACATCAATTACAAAGATGGATTGGAAATCAAAGCTTACTTGAACTCCACGTCATCCCCAAC TGCAACAATATCATTCCATGGTACTTCGATCGGAAAGTTGAGTGCCCCGCAAGTAGCCTCATTCTCGTCGAGAGGTCCAAGCAAACAAAGTCCCTGGATC CTGAAACCTGACATCATTGGTCCTGGGGTGAGCATTTTAGGTGCTTGGGCAGAGTCGGTTGACAATTCTACCAACTCGTTCAATATTGTGTCGGGAACTT CGATGTCTTGCCCGCATCTTAGTGGCGTTGCAGCTCTGGTTAAGGAAGCTCATGTGGATTGGTCACCAGCTGCCATAAAGTCAGCCATTTTGACCACTGC TTACACAAAGGACCTTAGTGGCAAGCCGATCTCCAACGAGCAGAATTCTTCTGCTACTGTTTTTGATATGGGTGCTGGCCATGTGAACCCACCAAAGGCT TTGGAGCCAGGCTTGGTATATGATATCCAACCGGATGATTACGTCGCGTATATCTGCAGTTTGGGTTATAACGAGACACAGATGAGATTGATCGTGCAGC GTAACGTGAAGTGTTCGAATGAATCTTCCATACCGGGGGCACAACTGAACTACCCTACATTTTCGATCTCGCTTGGTTCTGCTCCACAAACCTATACCAG AACGGTCACGAATGTTGGAATGCGTGACTTGACTTACACAAGCAAGGTATTCTCACCGGATGGTGTGGATGTTAAAGTCGAGCCAAGTGAGTTTAATGTC AAGGAGTTGAAAGAGAAAGCAACGTATTCGATAACGTTCAGCAGAGTGGGGAATGTGACTAGAAGTATGAGCCAAGGTTCTTTGGTGTGGTCGTCAGCTG ATGATAGGTACAATGTTGTGAGCACAATTGCTGTAGTGTTTGTTTGA
AA sequence Show only first row Show all	>Lus10006310 pacid=23178342 polypeptide=Lus10006310 locus=Lus10006310.g ID=Lus10006310.BGIv1.0 annot-version=v1.0 MKSYLLISLTLTSTFLHFFSAKGDDLNTYIVFLEKPENLTLTQSSDDLHGWHNTFLPETTLTSNENQQRLVHSYRNVITGFSARLTPEEAKAMEQKEGFV SARVERSLSLHTTHTPKFLGLQQILQQQKNVGPLNHWFSPSNLGRGVIIGIIDSGIKYDHPSFSDQGMPPPPARWKGKCEINGKTTCNNKLIGARSFPYP GNLSEEFLHGTHTAAEAAGTSVEGANVFGQANGTAMGIAPFAHLAVYKVCARSKECVESSVLAAMDAAIEDGVDVLSLSLGLKTDHLYDDVVALGAFRAI QNGIFVSCSAGNFGPDSYSVVNGAPWVLTVGAGTVDRDIRTTVTLGKNLQFHGQSSFQPEDFLTQPLPIVEASMISSNASAAFCAEGSLKNTDVRGKIVL CQGSRLMEGINQGKEVKENGGVAMILINDLAQGYTTQAEAHVLPASNINYKDGLEIKAYLNSTSSPTATISFHGTSIGKLSAPQVASFSSRGPSKQSPWI LKPDIIGPGVSILGAWAESVDNSTNSFNIVSGTSMSCPHLSGVAALVKEAHVDWSPAAIKSAILTTAYTKDLSGKPISNEQNSSATVFDMGAGHVNPPKA LEPGLVYDIQPDDYVAYICSLGYNETQMRLIVQRNVKCSNESSIPGAQLNYPTFSISLGSAPQTYTRTVTNVGMRDLTYTSKVFSPDGVDVKVEPSEFNV KELKEKATYSITFSRVGNVTRSMSQGSLVWSSADDRYNVVSTIAVVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006310 [exp]	0	1
AT1G06330			Heavy metal transport/detoxifi...		Lus10028331 [exp]	1.7	0.9282
AT4G38380			MATE efflux family protein (.1...		Lus10023944 [exp]	2.0	0.9224
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10009705 [exp]	4.5	0.9006
AT4G31880			unknown protein		Lus10002307 [exp]	4.6	0.9514
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10011662 [exp]	6.2	0.9363
AT4G01310			Ribosomal L5P family protein (...		Lus10033169 [exp]	11.6	0.8225
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10016368 [exp]	13.1	0.8011
AT4G18530			Protein of unknown function (D...		Lus10024473 [exp]	16.0	0.5621
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10031542 [exp]	17.0	0.8997
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	18.3	0.8997

Compare expression of checked genes

Lus10006310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.