Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19875 72 / 6e-17 unknown protein AT2G31940 66 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024507 [exp] 69 / 2e-15 AT5G19875 104 / 8e-30 unknown protein Lus10008006 [exp] 62 / 5e-13 AT5G19875 90 / 7e-24 unknown protein Lus10034527 [exp] 43 / 1e-05 AT5G19875 52 / 2e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009200 [exp] 71 / 2e-16 AT5G19875 72 / 5e-17 unknown protein Potri.003G216100 [exp] 67 / 6e-15 AT5G19875 86 / 1e-22 unknown protein Potri.001G231300 [exp] 61 / 9e-13 AT5G19875 69 / 8e-16 unknown protein Potri.009G024500 [exp] 61 / 3e-12 AT2G31940 96 / 2e-26 unknown protein Potri.001G009300 [exp] 47 / 1e-07 AT5G19875 51 / 3e-09 unknown protein Potri.003G216000 [exp] 46 / 4e-07 AT5G19875 44 / 1e-06 unknown protein Potri.009G129301 [exp] 42 / 6e-05 AT5G42146 45 / 8e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006311 pacid=23178388 polypeptide=Lus10006311 locus=Lus10006311.g ID=Lus10006311.BGIv1.0 annot-version=v1.0 ATGGCTAGATACAACTACAACAACAACAGATACTACTACTACTGGGACCAACTCTGCAACATCTCAATGCCATTCCACTTCTTCATCTTCACTCTAATCC TCTCATTCATCCTCTCACTCACTTGGTACATCCACTACTTCTACGTCGTCGAAGAAAAGATGATGTACAACTTCAAGTTCTTCCTCATGCTCACACCTCT CCTTTTGCTACTCCTCACTCAACTCCTCTCCCACACTACTCCTGCTAACAACAACAATTACGGTCGCGGTCGTCGTTGGAGTTGGTTCCTCCCTTCCTTC TCGATCCCTCTACCAGAGAAGGACTCGATCCACCGCGCCGGTGGGTCCCCGTGGGGAGTTGCTCTCCTGCTCGTCTTCCTCTTGTACATGGTCTCTTACC AGTCTTCTCTTCATGAACGTTGGTTCCCTTTGGTTACCAGATGA
AA sequence Show only first row Show all	>Lus10006311 pacid=23178388 polypeptide=Lus10006311 locus=Lus10006311.g ID=Lus10006311.BGIv1.0 annot-version=v1.0 MARYNYNNNRYYYYWDQLCNISMPFHFFIFTLILSFILSLTWYIHYFYVVEEKMMYNFKFFLMLTPLLLLLLTQLLSHTTPANNNNYGRGRRWSWFLPSF SIPLPEKDSIHRAGGSPWGVALLLVFLLYMVSYQSSLHERWFPLVTR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19875			unknown protein		Lus10006311 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10042095 [exp]	1.4	0.9353
AT3G57930			unknown protein		Lus10031806 [exp]	4.5	0.9123
AT2G27550		ATC	centroradialis (.1)		Lus10020600 [exp]	5.3	0.9312
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029570 [exp]	7.3	0.9078
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10035467 [exp]	7.4	0.9094
					Lus10038619 [exp]	8.8	0.8581
AT5G46090			Protein of unknown function (D...		Lus10013971 [exp]	9.3	0.8439
					Lus10000169 [exp]	9.5	0.8551
					Lus10041636 [exp]	9.6	0.9158
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10041729 [exp]	10.6	0.9008

Compare expression of checked genes

Lus10006311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.