Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11670 701 / 0 Protein of unknown function (DUF810) (.1) AT5G06970 412 / 7e-127 Protein of unknown function (DUF810) (.1) AT2G20010 261 / 6e-74 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G25800 256 / 2e-71 Protein of unknown function (DUF810) (.1) AT2G33420 224 / 2e-60 Protein of unknown function (DUF810) (.1) AT1G04470 204 / 5e-54 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029581 [exp] 1500 / 0 AT4G11670 957 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 421 / 3e-130 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 388 / 3e-117 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1) Lus10034947 [exp] 292 / 5e-84 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008431 [exp] 236 / 7e-68 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 218 / 2e-61 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10023742 [exp] 212 / 3e-56 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 202 / 1e-53 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012969 [exp] 157 / 9e-41 AT2G25800 545 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108400 [exp] 977 / 0 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G030100 [exp] 418 / 4e-129 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 279 / 2e-79 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.006G238200 [exp] 275 / 4e-78 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 256 / 2e-71 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.010G068000 [exp] 232 / 5e-63 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.008G170200 [exp] 224 / 2e-60 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10006312 pacid=23178361 polypeptide=Lus10006312 locus=Lus10006312.g ID=Lus10006312.BGIv1.0 annot-version=v1.0 ATGGAGCCGGCGGCGCTGTTGCATCGCTACCGTCGCGATCGCCGGAAGCTGTTGGACTTCCTTCTGTCTTCCGGACTGATCAAGGAGCTCCGCACTCCTC CTGGTTCCTCCGCCAGCTCCCTCTCCGACCTTGATTTAGACTCTCTCAGCGCCGATTACGTCCTCCACTGCCTCAAGTCAGGCGGTGTTATTGACGTTGC TGAAGCTACTAAGAAGCACTTGGAGGAATCTGCTTATCCTGTCATGATGGAGTCGAGAAAGGGGAACACCTATTTCCTTGTTGGTGATCCAGATTCAGCT GGATCTCCTCCTAGGCGCACACCTCCTCCGATTAATCTTAGACGGACATCGGATGTCTCACGCTCATCACGTCGATTGAATACTTCACATTCAAATGCAA CAACTTCTGCGAATGGCCATGGTTCTCAGTATAAAGTGTCAGTACCTGATGTTCCTGCAAATATATTAGAAGAGTTTCTGTGTTCTTCTACAGAGGCTGT AGGAGCTGCAGGTCCAACTATTAAAAACCATATTGCAAAGATTAAGGACGCAGAGGAATGGGATGCAATGTCTCCTTCTGAACGTGTTGCGGTTCTAGCA TCTGTTAAACAAGTTGCTCTTAGAGTGTCTTCTTTGCCTGGTCGATTTGGTATCCAAGGCGAAACCTTTTATTGGACTGCTGATTATCACTTGAACGTCA GGATTTATCAGAATTTGCTCCTTGGTTTGTTTGATGTTCTCGAGGAAGGTCAGCTCATAGAGGAAGCAGAGGAACTACTACCGTTTATAAATTCGACATG GTCTACTTTAGGCATCACTCAAGGGATGCATAATGCACTCTATGGTTGGACTCTCTTTCAACAGTTCTTAAGTACAGGCAACACCTTGCTGCTGGAGAAT GTAGTTGTTGAGTTGCAGAAAGTTCTATCTGCTGAAAAGGAAAATTGGTTGGAACAAGAGTATATCAACAGCCTAGCTTGTTCCAGGCAACACGAGGGGA AGAGATTGAAGCTAAATCTGGTGCAGGATATAGTTCTCTCAATAAGCAATTCTTGTGACAGCAAACTTCAAGATTATCATCTGAATTTCTCTGAGCAACC ATCTAGCTTCAGATTCATGGTAAACTTGTTGGCAATGGTGGGAGTTCCAGTTTTTAAAGGTAGTGGTGAACTTAAGTTCACAAAACTGAGTTCTTCAAAC AAAAATGCTGCTAGGAAACTGAAATCTTATGTCAAGGGGTCAACTGAGGCTGCATGCAGACGGGTGAGACTTGTAGAAAGCAAGATATATCTTGCATCTA AAGTAGAGAAGAGACATCCTTTAGCTCTCCTGGCTGATGGACTAAAGTTGATTGCTGAGAAAGAATCGGAAGTCTTCTCTCCTGTTCTTCGTCACTATTG TCCTGATGCCTTGATCATCTCGGTTGTGTCATTGCACCAGTTTTTTGGAGAAAAATTGAAACCGTTCATAGCAGGAGTTTCATCTTTTTCAGAGGATGTC CAATATGTACTTTCTGCTGCTGATCAGTTAGATTATTACCTGACGCAGCTGTATAAATCAGCTTCAGAAGTAAATGCGTCAAAGCATTACTTGAATCAGA ATTTGGAACATTATCGGATTGCAGAAGTTTCAAAACCGTTGATTATCGATTGGGTGATATCTCAGCATGACCATATTTTGGAATGGACTGGACGTGCGTT TGATCTTGAGGACTGGGAGCCTTTGTCATTGAATAAGAGGCAAGCGGCATCAATCGTTGAAGTTTTTAGAATTATAGAGGAGGCTGTGGATCAATTCTTC GGGTTCAATCTCCCTCTTGATATCACTCATCTACAAGCCCTGCTGTCTATAATATTTCACAGCCTGGATTCCTATCTGCAAAAACTACTAAGTCAGTTAG TTCCGAAGACTCATCTGTATCCTCCCATTCCTCCGTTAACTCGTTATACAGAATCTGTTATGCCAGTGATCAGGAAGAAGTTGTCAGAGTGTGTCCTTGC CGATGACAATTTGGGCTGCAACTTGGATGGATTGACAGTTCCAAAGCTTTGCGTGAGGTTAAACACTCTCCAATATATTTGCAAGCAAACAAGAACATTG GAAGATGGAATTAGAAAGTCTTGGGCAGACGTGAGACCATCTCAAAACAACCGTGCCAGAATTATCTTTTGGGACCTTAGACAGAAATTCTTGCTTGGTT TATACCATGGCGATGTTGGAAGTTCTCGCTTAGAAAGTTTCGTTCCTCAGATAGATAACGATCTCAACGAGATATGCCGTTTGATTGACGACACACTAAG AGACACGGTGGTGTCAAGCGTTTGCCGAGCATCATTGGAAGGATTCGTCTGGGTAATGCTCAATGGAGGCCCTTCTCGTGCATTTTCTGATTCTGATGTT GTCATGATGGAAGAAGACTTCAACGTTTTGAAGGAGTTTTTTATTGCCAGTGGAGAGGGTCTTCCGCGATCAGTGGTTGACCGAGAAGCAAAATATGCGG AACAGATACTTAACTTGTTCTCCCTTCAGACTGAGACTTTGATACGAATGTTGATGAACGCAAGTGAACACATCTCACTAAGGCCAGATACACATCAACA ACAAGGAAACCACAAGCCTTCCGATGCCCAAACGCTGGTTCGTGTCTTGTGCCACAAGAAAGACAGGGAGGCGTCAAAGTTCTTAAAACGGCAATACGAA CTTCCCATGTCTTCGGAGTACGATGAGAGCGCATCATCACAAGAATCAACGACAAAGTCACCTCTTATAACAGATCTTCTTAATCGGAGCGCCTCGTTGC GAAGCGCTTCGATGCGCTGGGGGGAGAAAGGTGCAGCGCTCAGTTGGGGAGACAAGGGGTCTAGCAGTTTCAGAAACTTGAAAAAACGGTTCCAAGAAGT AACGAGTGAGATCAGTTACATGAAACGCTGA
AA sequence Show only first row Show all	>Lus10006312 pacid=23178361 polypeptide=Lus10006312 locus=Lus10006312.g ID=Lus10006312.BGIv1.0 annot-version=v1.0 MEPAALLHRYRRDRRKLLDFLLSSGLIKELRTPPGSSASSLSDLDLDSLSADYVLHCLKSGGVIDVAEATKKHLEESAYPVMMESRKGNTYFLVGDPDSA GSPPRRTPPPINLRRTSDVSRSSRRLNTSHSNATTSANGHGSQYKVSVPDVPANILEEFLCSSTEAVGAAGPTIKNHIAKIKDAEEWDAMSPSERVAVLA SVKQVALRVSSLPGRFGIQGETFYWTADYHLNVRIYQNLLLGLFDVLEEGQLIEEAEELLPFINSTWSTLGITQGMHNALYGWTLFQQFLSTGNTLLLEN VVVELQKVLSAEKENWLEQEYINSLACSRQHEGKRLKLNLVQDIVLSISNSCDSKLQDYHLNFSEQPSSFRFMVNLLAMVGVPVFKGSGELKFTKLSSSN KNAARKLKSYVKGSTEAACRRVRLVESKIYLASKVEKRHPLALLADGLKLIAEKESEVFSPVLRHYCPDALIISVVSLHQFFGEKLKPFIAGVSSFSEDV QYVLSAADQLDYYLTQLYKSASEVNASKHYLNQNLEHYRIAEVSKPLIIDWVISQHDHILEWTGRAFDLEDWEPLSLNKRQAASIVEVFRIIEEAVDQFF GFNLPLDITHLQALLSIIFHSLDSYLQKLLSQLVPKTHLYPPIPPLTRYTESVMPVIRKKLSECVLADDNLGCNLDGLTVPKLCVRLNTLQYICKQTRTL EDGIRKSWADVRPSQNNRARIIFWDLRQKFLLGLYHGDVGSSRLESFVPQIDNDLNEICRLIDDTLRDTVVSSVCRASLEGFVWVMLNGGPSRAFSDSDV VMMEEDFNVLKEFFIASGEGLPRSVVDREAKYAEQILNLFSLQTETLIRMLMNASEHISLRPDTHQQQGNHKPSDAQTLVRVLCHKKDREASKFLKRQYE LPMSSEYDESASSQESTTKSPLITDLLNRSASLRSASMRWGEKGAALSWGDKGSSSFRNLKKRFQEVTSEISYMKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11670			Protein of unknown function (D...		Lus10006312 [exp]	0	1
AT4G11670			Protein of unknown function (D...		Lus10029581 [exp]	1.4	0.9075
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	4.6	0.9168
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10004462 [exp]	4.9	0.8864
AT5G66810			unknown protein		Lus10016766 [exp]	7.4	0.8967
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10009064 [exp]	8.9	0.8836
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10002407 [exp]	11.1	0.8725
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10027755 [exp]	15.4	0.8968
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	16.6	0.9027
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	21.8	0.8595
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10023989 [exp]	22.2	0.8906

Compare expression of checked genes

Lus10006312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.