Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63170 376 / 1e-129 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT4G11680 376 / 2e-129 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 370 / 8e-127 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT3G61180 339 / 4e-115 RING/U-box superfamily protein (.1) AT1G68070 234 / 1e-74 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 227 / 2e-71 RIE1 RING-finger protein for embryogenesis (.1) AT4G32600 102 / 5e-24 RING/U-box superfamily protein (.1) AT1G80400 99 / 6e-23 RING/U-box superfamily protein (.1) AT5G55970 71 / 2e-13 RING/U-box superfamily protein (.1.2) AT4G26580 69 / 6e-13 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029582 [exp] 329 / 8e-112 AT3G61180 315 / 3e-106 RING/U-box superfamily protein (.1) Lus10041359 [exp] 319 / 3e-107 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 296 / 3e-98 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10021801 [exp] 235 / 6e-74 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10034587 [exp] 239 / 7e-74 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10012427 [exp] 105 / 1e-27 AT3G61180 125 / 5e-36 RING/U-box superfamily protein (.1) Lus10013144 [exp] 111 / 5e-27 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10008106 [exp] 107 / 6e-26 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10011475 [exp] 102 / 9e-24 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G123300 [exp] 385 / 8e-133 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.002G155200 [exp] 319 / 4e-107 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.014G075000 [exp] 300 / 1e-99 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.008G134900 [exp] 248 / 1e-79 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G106300 [exp] 241 / 5e-77 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.006G247000 [exp] 106 / 3e-25 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 101 / 2e-23 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 69 / 5e-13 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 65 / 1e-11 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.008G087200 [exp] 46 / 1e-05 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006313 pacid=23178363 polypeptide=Lus10006313 locus=Lus10006313.g ID=Lus10006313.BGIv1.0 annot-version=v1.0 ATGTCGACCGACGCAGCACCGTCAACGCCGTCACGGGCAGGATCATCATCATCGGACATAATCGACACGGCTCCTCTCCTCTCTTCAATTTCTCAATCGG ACCTGAACAACGGCAACTCCAACCGCCGATCCATCCGCCGGCAGTCCCTACGCGATGCGGCGAGGTTCCTCCGCAGGGCAAGCGGGCGCCGGATGATGCG CGAGCCGTCGATGATGGTGAGGGAGACGGCTGCCGAGCAGCTGGAGGAGCGGCAGAGTGATTGGGCGTATTCGAAGACTGTGGTGATTCTGGATATCATT TGGAATTTTGCGTTCGTGGCCGCGGCTGTTGCGGTGCTGCTTTTGAGCGGCGAGGAGCGGCCGAACATGCCGCTTAGGCTGTGGATCGTTGGGTACGGGA TGCAGTGTCTGTTGCATATGGGCTGCGTTATTGTGGAGTATAGAAGGAGGAGGAGGAGGAGATTGGGGTTTCAGCCTGCTGCTGCTGGAAGGGGTGATGG GAATTCGAGTTCTGGGTCCAGAGGGGATTCTAGTGATTACGTGACGCTCTCCCAGTTGCAGGATGACGAAGGAACCAGCATCGCAAAGCATCTGGAGTCT GCCAATACGATGTTTTCATTCATCTGGTGGATCATTGGGTTTTACTGGGTGTCTGCTGGTGGGCAAGATTTGTCACAAGACTCGCCTCAGCTTTATTGGC TTTGCATAGTCTTTCTTGGTTTTGATGTGTTCTTTGTGGTATTCTGTGTTGCTCTGGCTTGTGTCATCGGCATTGCTGTGTGTTGCTGTCTTCCATGCAT TATTGCAATCTTGTATGCTGTTGCCGATCAGGAAGGAGCCACCAAAGAAGACATAGACCAGCTTGCAAAGTTCAAATTCCGAAGGGTTGCCGATAGCGAG AAGCTCGCAGGAGATGAGCAAGAAGCCCCCGGTGGCGTAATGACAGAATGTGGCACCGATTCACCAATTGAGCATGCCCTGCCACAGGAGGATGCGGAAT GCTGCATATGCCTTTCTGCCTACGACGACGGCGTCGAGATCCGTGAACTCCCCTGCGGCCATCACTTCCACTGCATTTGCGTAGAGAAGTGTTTCCTGAA TGCTTAG
AA sequence Show only first row Show all	>Lus10006313 pacid=23178363 polypeptide=Lus10006313 locus=Lus10006313.g ID=Lus10006313.BGIv1.0 annot-version=v1.0 MSTDAAPSTPSRAGSSSSDIIDTAPLLSSISQSDLNNGNSNRRSIRRQSLRDAARFLRRASGRRMMREPSMMVRETAAEQLEERQSDWAYSKTVVILDII WNFAFVAAAVAVLLLSGEERPNMPLRLWIVGYGMQCLLHMGCVIVEYRRRRRRRLGFQPAAAGRGDGNSSSGSRGDSSDYVTLSQLQDDEGTSIAKHLES ANTMFSFIWWIIGFYWVSAGGQDLSQDSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGATKEDIDQLAKFKFRRVADSE KLAGDEQEAPGGVMTECGTDSPIEHALPQEDAECCICLSAYDDGVEIRELPCGHHFHCICVEKCFLNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	0	1
AT5G46170			F-box family protein (.1)		Lus10023298 [exp]	1.7	0.8826
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	1.7	0.8939
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10005364 [exp]	3.0	0.8608
AT1G24480			S-adenosyl-L-methionine-depend...		Lus10006247 [exp]	4.1	0.8341
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	4.5	0.8869
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	4.6	0.8653
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10018727 [exp]	4.7	0.8505
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018705 [exp]	4.9	0.8667
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	5.0	0.8751
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	8.7	0.8783

Compare expression of checked genes

Lus10006313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.