Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53020 183 / 9e-59 RPL24B, STV1 SHORT VALVE1, Ribosomal protein L24e family protein (.1) AT2G36620 182 / 1e-58 RPL24A ribosomal protein L24 (.1) AT2G44860 71 / 4e-15 Ribosomal protein L24e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029583 [exp] 311 / 5e-108 AT2G36620 232 / 4e-78 ribosomal protein L24 (.1) Lus10024560 [exp] 202 / 5e-66 AT2G36620 238 / 2e-81 ribosomal protein L24 (.1) Lus10032198 [exp] 201 / 5e-66 AT2G36620 240 / 1e-82 ribosomal protein L24 (.1) Lus10008640 [exp] 191 / 4e-62 AT2G36620 243 / 1e-83 ribosomal protein L24 (.1) Lus10035584 [exp] 191 / 5e-62 AT2G36620 241 / 5e-83 ribosomal protein L24 (.1) Lus10014637 [exp] 92 / 1e-23 AT2G36620 100 / 6e-28 ribosomal protein L24 (.1) Lus10020552 [exp] 76 / 6e-17 AT2G44860 240 / 2e-82 Ribosomal protein L24e family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G085300 [exp] 190 / 1e-61 AT3G53020 199 / 2e-66 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.015G141900 [exp] 188 / 8e-61 AT3G53020 196 / 3e-65 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139500 [exp] 187 / 2e-60 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139400 [exp] 187 / 3e-60 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.003G123101 [exp] 176 / 3e-56 AT3G53020 218 / 8e-74 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.009G148500 [exp] 71 / 5e-15 AT2G44860 248 / 1e-85 Ribosomal protein L24e family protein (.1.2) Potri.004G187800 [exp] 70 / 7e-15 AT2G44860 249 / 8e-86 Ribosomal protein L24e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF01246 [flax] [poplar] Ribosomal_L24e Ribosomal protein L24e
Representative CDS sequence Show only first row Show all	>Lus10006314 pacid=23178360 polypeptide=Lus10006314 locus=Lus10006314.g ID=Lus10006314.BGIv1.0 annot-version=v1.0 ATGGGTAAGTTGGCCCAAACTATCGGGCCGGAAAAGTCATCGGAAGCCCATTTCTTCCGCAACTCCTCTTCTAATTTCTTCAAGGTTTTCCGGGGAGGGT TAAATAAGAGAGGTAAGAGTCTATCTAGGGTTTTACGAGAACAGAAGACCCAGGAGAGCAGCAGCTGGAGGAGGATAGCTGCGTTGACTGATACCTACAT CTTATCGCCATGGACCGAGCTATGCCGTTTCAGCGGTCAAAAGATCTACCCAGGCAGGGGCATCAGATTTATCCGCTCTGATTCTCAGGTTTTCCTCTTT GCCAACTCCAAATGCAAGAGGTACTTCCACAACCGCCTGAAGCCTTCCAAGCTTACCTGGACTGCCGTGTTCAGGAAGCAGCACAAGAAGGATATTGCTG CTGAGGCTGTGAAGAAGAAGAGAAGGACCAACAAGAAGCCTTACTCGAGGTCAATTGTCGGTGCTTCCTTGGAGGTGATCCAGAAGAAGAGGGCCGAGAA GCCAGAAGTCCGTGATGCTGCTCGTGAAGCTGCCATTCGTGAGATCAAGGAGAGGATCAAGAAAACCAAGGACGAGAAGAAGGCGAAGAAGGCCGAAGTT TCCAAGTCACAGAAGGCACAAGGCAAGGGTGCTATGCCCAGGGGTGCTGCACCCAAGGGAGGACCCAAGCTTGGCGGTGGGGGTGGAAAGCGGTAA
AA sequence Show only first row Show all	>Lus10006314 pacid=23178360 polypeptide=Lus10006314 locus=Lus10006314.g ID=Lus10006314.BGIv1.0 annot-version=v1.0 MGKLAQTIGPEKSSEAHFFRNSSSNFFKVFRGGLNKRGKSLSRVLREQKTQESSSWRRIAALTDTYILSPWTELCRFSGQKIYPGRGIRFIRSDSQVFLF ANSKCKRYFHNRLKPSKLTWTAVFRKQHKKDIAAEAVKKKRRTNKKPYSRSIVGASLEVIQKKRAEKPEVRDAAREAAIREIKERIKKTKDEKKAKKAEV SKSQKAQGKGAMPRGAAPKGGPKLGGGGGKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10006314 [exp]	0	1
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	3.2	0.9370
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	3.9	0.9421
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10015357 [exp]	5.3	0.8854
AT1G26880			Ribosomal protein L34e superfa...		Lus10008617 [exp]	6.5	0.8912
AT1G15420			unknown protein		Lus10030351 [exp]	6.5	0.9039
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	6.6	0.8999
AT4G11060		MTSSB	mitochondrially targeted singl...		Lus10031482 [exp]	7.0	0.8596
AT5G08540			unknown protein		Lus10010158 [exp]	7.9	0.8472
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10014554 [exp]	8.1	0.8782
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10031974 [exp]	8.3	0.8888

Compare expression of checked genes

Lus10006314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.