Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11720 668 / 0 HAP2, GCS1 GENERATIVE CELL-SPECIFIC 1, hapless 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029584 [exp] 944 / 0 AT4G11720 830 / 0.0 GENERATIVE CELL-SPECIFIC 1, hapless 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109000 [exp] 756 / 0 AT4G11720 936 / 0.0 GENERATIVE CELL-SPECIFIC 1, hapless 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10699 [flax] [poplar] HAP2-GCS1 Male gamete fusion factor
Representative CDS sequence Show only first row Show all	>Lus10006315 pacid=23178341 polypeptide=Lus10006315 locus=Lus10006315.g ID=Lus10006315.BGIv1.0 annot-version=v1.0 ATGGAGCAATCGGCTATCCCAATCGTCTCCTTCTGCTGCTTCCTTCTCTGTTTCTCGACCTCCGCGTCCGCGGGAGTGGAGATCCTCTCCAAATCAAAAG TTGAGAGGTGCGAGATGGGATCCGGCGCCGATGAACTCAACTGCACGCGAAAAGTCGTCCTCAACATGGCAGTTCCCAGTGGCACCAGTGGGAAAGATTC ATCGATCGTGGCGGAAATAGTGGAAGTGGAGGAGAACTCCACCGACTATATGCAAACACTGCGAACACCGCCTGTGATAACGATCAACAAATCTTCTGCG ATTGAAGTAGTTATCCCTTATTTCCTTCTTGTCTGCAGATTGCAAGATGAAAACGGTCATGTTATTCAGCATTCAGAGCCAATCTGCTGTCCTTGTGGGC CCCGTAGGCGAGTACCTTCGTCCTGCGGAAACTTCTTTGATAAATTGGTGAAAGGAAAGGCAAATACAGCACACTGCGTCAGATTTCCAGGTGATTGGTT TCATGTATTTGGGATTGGCCAGAGGTCAGTTGGATTTAGTGTCAAAATTGAAGTGAAGATTGGATCTACAATCTCGGAAGTGATTTTGGGCCCTGAAAAT AGAACAGCTACATCAAAGGACAATTTTCTAAGAGTTAATCTAATTGGAGACTTCGTTGGATATTCTAGCATTCCTTCATTTGAAGACTTTTACCTTGTTC TTCCGAAGCAGGGGGGTTCTGGACAGCAAGAAATGGGGAGGAATTTTTCCATGTGGATGCTACTTGAAAGAGTTAGATTTACACTCGATGGAGTTGATTG CAATAAAGTTGGTGTCAGTTATGAGGCGTTCAGTGGACAATCAGATTTCTGTGCCTCACCATTCTGGAGCTGCTTACATAATCAGCTATGGAATTTCTGG AATGCTGATCAAAACCGAATATCTAGAAAGCAGCCACCGCTGTATGTTGTTGAAGGAAGGTTTGAAAGGAATGCAGGGTCTCATTCGTTCTCCATCGGAA TCACTGAGGTTCTTAATACAAACCTGTTGATAGAACTAAGAGCAGATGACATCGAATATGTCTACCAAAGGAGCCCAGGGAAAATTATCGGGGTCACAGT TCCCACATTCGAGGCCCTATCACAATTTGGAATTGCGACAATCACAGCTCAGAATATAGGGGAAGTGGAAGCATCCTACAGTTTAACGCTTCACTGCTCA AAAGGCGTTTCCCTTGTGGAGGTACCAGCTATTTTGAAGGACTCCAATTTTAAAGAAGTGGATCGAGCCGATTGTCAATTTTCTACAACAGCTACTACTA TTGACAATGGGTCTCAGATCGGTCCTTTCATGCCACCCAATACAGGACATCATGGGTTCATGGAGTTTTTCAGGACGCTGTGGAACAAACTGTGGGAAGC TCTGTCAGACTTCATCACTGGAAAAACTTGCAGAAGCAAATGCAGTGGCTTCTTTGACTTCAGATGCCAGATACAGTATATATGCTTCAGCTGGATGGCG ATGTTTGGTTTACTTCTAGCTAGTTTCCCAACAGGTAAAAAGTAA
AA sequence Show only first row Show all	>Lus10006315 pacid=23178341 polypeptide=Lus10006315 locus=Lus10006315.g ID=Lus10006315.BGIv1.0 annot-version=v1.0 MEQSAIPIVSFCCFLLCFSTSASAGVEILSKSKVERCEMGSGADELNCTRKVVLNMAVPSGTSGKDSSIVAEIVEVEENSTDYMQTLRTPPVITINKSSA IEVVIPYFLLVCRLQDENGHVIQHSEPICCPCGPRRRVPSSCGNFFDKLVKGKANTAHCVRFPGDWFHVFGIGQRSVGFSVKIEVKIGSTISEVILGPEN RTATSKDNFLRVNLIGDFVGYSSIPSFEDFYLVLPKQGGSGQQEMGRNFSMWMLLERVRFTLDGVDCNKVGVSYEAFSGQSDFCASPFWSCLHNQLWNFW NADQNRISRKQPPLYVVEGRFERNAGSHSFSIGITEVLNTNLLIELRADDIEYVYQRSPGKIIGVTVPTFEALSQFGIATITAQNIGEVEASYSLTLHCS KGVSLVEVPAILKDSNFKEVDRADCQFSTTATTIDNGSQIGPFMPPNTGHHGFMEFFRTLWNKLWEALSDFITGKTCRSKCSGFFDFRCQIQYICFSWMA MFGLLLASFPTGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Lus10006315 [exp]	0	1
AT1G79890			RAD3-like DNA-binding helicase...		Lus10037548 [exp]	7.4	0.8900
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	12.7	0.8869
AT2G01905		CYCJ18	cyclin J18 (.1)		Lus10031940 [exp]	13.6	0.7942
AT1G29630			5'-3' exonuclease family prote...		Lus10002782 [exp]	13.9	0.8251
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	17.6	0.8748
AT3G42660			transducin family protein / WD...		Lus10021720 [exp]	21.0	0.8786
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	21.2	0.8629
AT5G43530			Helicase protein with RING/U-b...		Lus10041156 [exp]	21.3	0.8784
AT5G38690			Zinc-finger domain of monoamin...		Lus10017575 [exp]	24.0	0.8434
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10004624 [exp]	27.4	0.8005

Compare expression of checked genes

Lus10006315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.