Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029584 [exp] 109 / 1e-27 AT4G11720 830 / 0.0 GENERATIVE CELL-SPECIFIC 1, hapless 2 (.1) Lus10029589 [exp] 67 / 7e-13 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10023039 [exp] 61 / 4e-11 AT1G60400 59 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10029587 [exp] 61 / 5e-11 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 56 / 5e-09 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10014141 [exp] 55 / 8e-09 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10029586 [exp] 54 / 1e-08 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10014140 [exp] 47 / 3e-07 ND 36 / 0.002 Lus10032433 [exp] 47 / 4e-06 ND 50 / 6e-08
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006316 pacid=23178357 polypeptide=Lus10006316 locus=Lus10006316.g ID=Lus10006316.BGIv1.0 annot-version=v1.0 ATGAGCAAGGTAGTCGTTAGTATTTCAAAGTTTCTAAAGCAACAACCTTCTCCATTCGAGAAACTGAAGTTAATTTTGGAGATCGAGTCCCAAGACATGA TACCTTTCGAGGTTTTCGATAGTTACTTTTTCAAAGGATCTCCTAATGCTGGCTCAAACATCCGAATTCGGGAGGAAAGATTGTCGCAATGTTCCATCTC TCAAAGACTTCAACTACTCCCCTCTATGGTTTCTTTTGTCCCTGTGTCCATGATGCTCGACCCTGTCATTTCCCATTTCTCCGAAACGGGAATGCTGCAC AATGCTCGTCTTCCTGGATCGATGATGCTGCTTGGTCCGGTCCTTGTTGACATGGTGAAGCTGATAGTAGTAGTAGTCAGCATCAGCTCCCGGATGCTTG TCGTGGGAGTGATGGATGCTTCTTCGTCGATGATGTGTTGTCCGGCGTTTGTGGTGGTGTCTGGTTCCATGGTCGTGGTGGTGTTTTTTGTTACCGTGAT AGATGTGATGGTTAGCATTGTTGTGATGTCTCCGATGCTTCTGATCGCCAAGGTGATCCTCCCACCAGTTGTAAAAGGGGTCGAAAAAGCCCTTCTGGTG TAG
AA sequence Show only first row Show all	>Lus10006316 pacid=23178357 polypeptide=Lus10006316 locus=Lus10006316.g ID=Lus10006316.BGIv1.0 annot-version=v1.0 MSKVVVSISKFLKQQPSPFEKLKLILEIESQDMIPFEVFDSYFFKGSPNAGSNIRIREERLSQCSISQRLQLLPSMVSFVPVSMMLDPVISHFSETGMLH NARLPGSMMLLGPVLVDMVKLIVVVVSISSRMLVVGVMDASSSMMCCPAFVVVSGSMVVVVFFVTVIDVMVSIVVMSPMLLIAKVILPPVVKGVEKALLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006316 [exp]	0	1
AT3G52680			F-box/RNI-like/FBD-like domain...		Lus10029997 [exp]	1.0	0.9047
AT3G13898			unknown protein		Lus10008387 [exp]	15.9	0.8926
AT5G47570			unknown protein		Lus10008504 [exp]	18.1	0.8001
AT1G49410		TOM6	translocase of the outer mitoc...		Lus10007383 [exp]	19.7	0.8874
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10007891 [exp]	20.7	0.8380
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10002785 [exp]	21.2	0.8078
					Lus10016269 [exp]	23.8	0.8340
					Lus10004923 [exp]	25.5	0.8374
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037666 [exp]	29.1	0.8782
AT5G63135			unknown protein		Lus10019491 [exp]	29.8	0.8270

Compare expression of checked genes

Lus10006316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.