Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07730 251 / 1e-81 Disease resistance-responsive (dirigent-like protein) family protein (.2) AT2G28670 241 / 7e-80 ESB1 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT2G39430 187 / 1e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G55230 174 / 2e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G24020 150 / 2e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G13580 147 / 8e-43 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G28671 84 / 1e-18 unknown protein AT1G22900 61 / 3e-11 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 61 / 4e-11 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21100 61 / 7e-11 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029585 [exp] 245 / 7e-83 AT2G28670 166 / 6e-53 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Lus10011767 [exp] 150 / 5e-44 AT3G24020 339 / 7e-119 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10023689 [exp] 150 / 6e-44 AT3G24020 336 / 1e-117 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10003301 [exp] 130 / 5e-34 AT3G55230 254 / 2e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10030318 [exp] 123 / 9e-34 AT3G55230 276 / 2e-93 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 67 / 4e-13 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 64 / 2e-12 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 65 / 7e-12 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034482 [exp] 63 / 2e-11 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049200 [exp] 297 / 7e-101 AT2G28670 276 / 2e-90 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.010G211800 [exp] 297 / 7e-101 AT2G28670 257 / 6e-83 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.010G211900 [exp] 196 / 3e-60 AT2G39430 249 / 3e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.008G049100 [exp] 189 / 1e-57 AT2G39430 251 / 6e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G054100 [exp] 162 / 2e-48 AT4G13580 308 / 3e-106 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G174300 [exp] 152 / 7e-45 AT3G24020 315 / 2e-109 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G054000 [exp] 151 / 2e-44 AT3G24020 352 / 5e-124 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.010G212000 [exp] 99 / 2e-24 AT1G07730 103 / 1e-25 Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.003G134800 [exp] 64 / 3e-12 AT1G64160 188 / 4e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.008G061400 [exp] 61 / 7e-11 AT2G21110 223 / 7e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10006317 pacid=23178373 polypeptide=Lus10006317 locus=Lus10006317.g ID=Lus10006317.BGIv1.0 annot-version=v1.0 ATGGAGACCCTCGGGATTCTTTTGCTCATCATGCTCACCGTTGCATTCACCACATCGGCTAGAAAGCTCGACGAACAGCCAGTGAAGCCCGAAACCCCAC TGGCTGCTGCACCGGTTCCTCCCGCAGAAACCAACCCTATTGTTGGATTAGCGGAAGGTGGCCATGCCATGACATTCTTTATGCACGATATTCTTGGAGG GTCGAACCCGTCCACAAGAGCAGTGACGGGAGTAGTGAACAACCCGGCAATCAACGGCCAGGTCCCATTCTCCAAACCCAACGGAGCCGTCCTCCCGGTC AACAACGGAGTCAACCAAAACAACAACAACAACGGAGTGCTCAACAACAACAACTTGCCGTTCCTCACCGGCCTCGGCGGGACCACGGCCAATGTGATAC AGAACAACAACAATGGAAACAACAACGGGTTCAATAATTTCCCGGCTTCCATCAACGGAGGCCAGCTCCCGACAGGCTCGGCCCTGGGGCAGCTAATGTT CGGGACCATCACAGTGATCGACGATGAGCTCACAGAAGGGCATGAATTGGGGTCTCCTCTTGTGGGGAAAGCACAAGGGTACTACGTGGCGAGTTCGATT GATGGAAACAGTCAGGCCATGGCGTTCACTGCCATGTTCCATAGTGGTCATTATGAAGATAGTCTAAACTTCTTCGGAGTTCATAGGGCCGGTGTGTCGG AATCTCAGCTTGCTGTAATGGGCGGGACGGGGAAGTATGTGAATGCTAAGGGACATGCTGTTGTGAAGACCATTGTTCCCGGTGCAGCTGGAATTGGAAA TCAGCATGAAACTGATGGGTTTGAGACTTTGCTGGAGTTTACTGTTTATGTTGCATACTGA
AA sequence Show only first row Show all	>Lus10006317 pacid=23178373 polypeptide=Lus10006317 locus=Lus10006317.g ID=Lus10006317.BGIv1.0 annot-version=v1.0 METLGILLLIMLTVAFTTSARKLDEQPVKPETPLAAAPVPPAETNPIVGLAEGGHAMTFFMHDILGGSNPSTRAVTGVVNNPAINGQVPFSKPNGAVLPV NNGVNQNNNNNGVLNNNNLPFLTGLGGTTANVIQNNNNGNNNGFNNFPASINGGQLPTGSALGQLMFGTITVIDDELTEGHELGSPLVGKAQGYYVASSI DGNSQAMAFTAMFHSGHYEDSLNFFGVHRAGVSESQLAVMGGTGKYVNAKGHAVVKTIVPGAAGIGNQHETDGFETLLEFTVYVAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	0	1
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	1.0	0.9848
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	2.0	0.9811
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	4.5	0.9360
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	5.2	0.9581
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	5.3	0.9451
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031859 [exp]	6.0	0.9382
					Lus10024121 [exp]	6.9	0.9413
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10034020 [exp]	7.3	0.9240
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	7.7	0.9439
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020114 [exp]	8.9	0.9215

Compare expression of checked genes

Lus10006317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.