Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69630 72 / 4e-13 F-box/RNI-like superfamily protein (.1) AT5G56440 67 / 2e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G03040 67 / 3e-11 F-box/RNI-like superfamily protein (.1) AT5G02930 66 / 3e-11 F-box/RNI-like superfamily protein (.1) AT3G03360 65 / 9e-11 F-box/RNI-like superfamily protein (.1) AT5G41840 65 / 1e-10 F-box/RNI-like superfamily protein (.1) AT5G03100 63 / 1e-10 F-box/RNI-like superfamily protein (.1) AT5G41630 63 / 4e-10 F-box/RNI-like superfamily protein (.1) AT2G26030 62 / 6e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT5G18780 61 / 1e-09 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029586 [exp] 592 / 0 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10029587 [exp] 575 / 0 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10023042 [exp] 321 / 2e-104 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 319 / 2e-102 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10029589 [exp] 319 / 5e-101 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10014142 [exp] 301 / 1e-94 AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) Lus10014141 [exp] 294 / 1e-93 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10006319 [exp] 225 / 9e-69 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10029588 [exp] 206 / 2e-62 AT1G69630 54 / 2e-08 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 129 / 2e-32 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 122 / 3e-30 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 115 / 1e-27 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 89 / 7e-19 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 89 / 1e-18 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 82 / 1e-16 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 75 / 7e-14 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024600 [exp] 70 / 2e-12 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 70 / 3e-12 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002001 [exp] 66 / 2e-11 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10006318 pacid=23178348 polypeptide=Lus10006318 locus=Lus10006318.g ID=Lus10006318.BGIv1.0 annot-version=v1.0 ATGAAGACGAAGAAGAAGGCACGTAGCAGAATCCAGGTAGGGATTTCCGGAGGAGGAGTTGACAGAATAAGCAAGCTTCCAGACTCCATTCTTCACCACA TCCTCTCCTTCATCGATACAAAGTCCGCCGTTCAAACCTCAGTCTTGTCCAAGGAGTGGAAATCCGCCTGGAAACATGTTCATTCCCTCAATCTGGAGCT GAACTTCAATGAATATTCGAGGTACGAAAGGTTTGTGGACAATGTCATTTCCCTCCGCCGTCCACTTCATGTCAGCAAGGTTTTGCTATTGTGGAACCTG GGTGCGTGCCCTGTGGCTCCTGATGATGAATTTAGTCTGCTCAGAAGGCTTTTCCTATATGCTGTCTCCCATGGTGCTGAAGATTTCAACGTTCGACTGA GGGTTAATTTGTACATCCCTCTTCTCGAATTGTTTGACTCGATCTCTGATACTGTAAGGAGTCTAGAATTAGTACGGTTTGACCTCGATTGTCAGCCTAC ACGTTCTGCATTCGGGTTGCTAACTACGTTGAAGCTGTATGATTGTTGGTTCTCAACTGAAGACGAGCTGGTCGAGCCGTTTTCTCAATTTCCCTGTCTG AAAGATTTGGTCTTGGATAATTGCTTGTGGTTGGTAAGTGAAGATGATAACCGAATTAGGAGATTGAGGATTTCCGGACTCGAACTGGTTAACTTGACAG TCACTCGTATGAATGTGTGGAACTTTGAACTATTTGCACCTAAACTCGAATCTTTGGTGTTCTGTTTTGTGGAATTCACGGAATTCTCAGAGCTAACCCT CCCGTCCCTTGTTTATGCTGATGTTGGATTCCGTTTTGAGCACCTTTTCGATGAGGATGATGATATTGTCGTGGAACATCTAGTCGTCATGTTCCGTGGT CTACATAACGTGGAATTTCTGATGCTAGGCAAGGAAATCAGCAAGCTAGCGATGACTTCCAAAGGAGTTGACAGGATAAGCAATCTCCCAAGCTCCATTC AGCACCACATCCTCTCCTTCCTCGACACTAAATCCGCCGTCCAAACTTGTGTACTGTCCAAGCAGTGGGAATCCGCATGGAAACATGTTCATTCTCTCAA CCTGCAGAACGTTTACTTCCACGAATACTCGAGGTACGAATCGTTTGTTGACAAAGTCTTGTCCCTTCGCCACCCTCTTCCTGTTAGCAATGTTTGTATC GGTCCTATGGGTTGCGAGTTTAGTTTGCTGAAAAAGGTCGTCCAATATGCTGTGTCCCATGGTGCTCAACATTTCAACATTCGACCTATTAATCGTATTG CACCCAATATCTCTCTTGTCGAGTTGTTTGACTACATCTGCGACACTGTAACAACTCTGCAATTGGGGTGGATTCGCCTCAATTGTCAATCTGATTGGTC TGCATTCCGGTCGCTAACAATGTTAAAGCTATATGGAACTCGGTTCTCAGTCTCGGAGGATGGAGAACTCTTTGAGCCTTTTTCTCAACTCCCAAGTCTC ACTGATTTGGTCTTGAATAGTTGCTTATGGAAGAGGGTTAGTAAAGGTTTCATGGATTCCGATGAATCTGTGATTTTGAGGATTTCCGGACTCGAGCTGG TTAACTTAACTCTCTCGGATATTAATGTGTCCAAGTTAGAGATATTTGCACCTGAACTCGAATATTTCGGATTGTATTTGGACAAATACATGGAATTCTC AGAGCTAACGCTTCCTTCCATCGTTCATGCTGATATTCGGAGTAGTTATTGGCGTTCTATGGAGGGTTGTGATATTTCCATAGAGTCTCTGGTTTGTATG TTCGACGATTTACATAACGTGGAAACTTTGTCGCTATGTGGCGATATCTGCAATGTGGTCGATAGAAATTCTGAGCTTCTAGAGCAACAACCTTGTCCCT TTTCGGAGCTGAAGAAGTTAAATATGGAGTTTCGCTCCAACTACGGGATCCCTCACGAGGTTTTGCGTAGTTATTTTCTTAACGGATCTTCTGATGCTTC CCTAAACATCCGAATTCGGGAGGAGGAAGATGAATAG
AA sequence Show only first row Show all	>Lus10006318 pacid=23178348 polypeptide=Lus10006318 locus=Lus10006318.g ID=Lus10006318.BGIv1.0 annot-version=v1.0 MKTKKKARSRIQVGISGGGVDRISKLPDSILHHILSFIDTKSAVQTSVLSKEWKSAWKHVHSLNLELNFNEYSRYERFVDNVISLRRPLHVSKVLLLWNL GACPVAPDDEFSLLRRLFLYAVSHGAEDFNVRLRVNLYIPLLELFDSISDTVRSLELVRFDLDCQPTRSAFGLLTTLKLYDCWFSTEDELVEPFSQFPCL KDLVLDNCLWLVSEDDNRIRRLRISGLELVNLTVTRMNVWNFELFAPKLESLVFCFVEFTEFSELTLPSLVYADVGFRFEHLFDEDDDIVVEHLVVMFRG LHNVEFLMLGKEISKLAMTSKGVDRISNLPSSIQHHILSFLDTKSAVQTCVLSKQWESAWKHVHSLNLQNVYFHEYSRYESFVDKVLSLRHPLPVSNVCI GPMGCEFSLLKKVVQYAVSHGAQHFNIRPINRIAPNISLVELFDYICDTVTTLQLGWIRLNCQSDWSAFRSLTMLKLYGTRFSVSEDGELFEPFSQLPSL TDLVLNSCLWKRVSKGFMDSDESVILRISGLELVNLTLSDINVSKLEIFAPELEYFGLYLDKYMEFSELTLPSIVHADIRSSYWRSMEGCDISIESLVCM FDDLHNVETLSLCGDICNVVDRNSELLEQQPCPFSELKKLNMEFRSNYGIPHEVLRSYFLNGSSDASLNIRIREEEDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006318 [exp]	0	1
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	5.0	0.7607
AT1G50910			unknown protein		Lus10043058 [exp]	15.5	0.7570
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10020123 [exp]	26.5	0.7413
AT1G15220		ATCCMH	cytochrome c biogenesis protei...		Lus10027231 [exp]	47.0	0.7174
AT5G36930			Disease resistance protein (TI...		Lus10002249 [exp]	59.3	0.6477
					Lus10024697 [exp]	66.7	0.7142
AT3G46530		RPP13	RECOGNITION OF PERONOSPORA PAR...		Lus10025626 [exp]	71.1	0.7077
AT3G26922			F-box/RNI-like superfamily pro...		Lus10016192 [exp]	78.3	0.6502
AT1G13570			F-box/RNI-like superfamily pro...		Lus10029077 [exp]	78.8	0.6975
					Lus10026307 [exp]	80.0	0.6623

Compare expression of checked genes

Lus10006318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.