Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69630 67 / 1e-12 F-box/RNI-like superfamily protein (.1) AT1G66300 65 / 7e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G18780 61 / 1e-10 F-box/RNI-like superfamily protein (.1.2) AT1G66310 59 / 1e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22720 59 / 1e-09 F-box/RNI-like superfamily protein (.1.2) AT1G78760 57 / 2e-09 F-box/RNI-like superfamily protein (.1) AT5G02910 56 / 5e-09 F-box/RNI-like superfamily protein (.1.2) AT3G51530 56 / 7e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02920 54 / 1e-08 F-box/RNI-like superfamily protein (.1) AT2G26030 55 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029588 [exp] 287 / 1e-98 AT1G69630 54 / 2e-08 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 274 / 9e-91 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10023042 [exp] 269 / 4e-90 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10029589 [exp] 259 / 1e-83 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 236 / 3e-76 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10006318 [exp] 232 / 1e-71 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10014142 [exp] 227 / 1e-71 AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) Lus10014141 [exp] 218 / 3e-69 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10029587 [exp] 216 / 2e-68 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 79 / 1e-16 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 71 / 5e-14 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 69 / 3e-13 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 65 / 8e-12 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 65 / 1e-11 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104300 [exp] 64 / 1e-11 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 60 / 4e-10 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 57 / 2e-09 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G024300 [exp] 56 / 7e-09 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G121400 [exp] 55 / 1e-08 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10006319 pacid=23178374 polypeptide=Lus10006319 locus=Lus10006319.g ID=Lus10006319.BGIv1.0 annot-version=v1.0 ATGAACAAGAAACAGAAGAGCATTAGCAGCAGCGATGATCTAGGGATGGCAGCCGGAGGAGGAGAAGTTGACAGAATAAGTGATCTCCCAGAACCCATTA TTCACCATATCCTATCCTTCCTCGACACTCAATCCGCCGTTAAGACTTGTGTATTGTCCAAGCAGTGGGAATCAGCCTGGAAACATGTTCATACTCTGAA TCTTGAGCTGAAATTCGACGAATACTCGTGGTACGTAATGTTTGTCGAAAAAGTCTTGTCCTTTCGCCATCCCCTTCCTGTTAGCAAGGTTTTATGGCAC CCATATGACTACTCTTACGGTCCTATTGGTTCCGAGTTTAGTCTGCTCAGAAGGGTCGTCCAGTATGCAGTGTCCCATGGTGCTCAACATTTCGACCTAC AACCCAGATGTAAATTTAAACCCGATATCCCTCTTTTCGAATTGTTTGACTCCCTTTCTGGCACTGTAACAAGTCTGAAATTATTACGGTTGCTAACAAC CTTAAAGCTGCAACGTTGTTGTCTCTCAGCTGACGGGGAGCTCGGTGAGCCCTTTCCTCAATTTCCCTGTCTTAAGGAATTGGTTTTGCTTGATTGCTGG TGGGTAAGTAAAGGTGATGATTACAGACCTGTGAGATTGAGGGTTTGTGGACTCGAGTTGGACAGGTTGAGCTTCTTAAATATGCATGTCTGGGAGTTGG AAATATTTGCACCGAAACTCAAATATTTCAAATTGATATCTCGGGGTATCATGGAGTTCCAGCAGAGCTAA
AA sequence Show only first row Show all	>Lus10006319 pacid=23178374 polypeptide=Lus10006319 locus=Lus10006319.g ID=Lus10006319.BGIv1.0 annot-version=v1.0 MNKKQKSISSSDDLGMAAGGGEVDRISDLPEPIIHHILSFLDTQSAVKTCVLSKQWESAWKHVHTLNLELKFDEYSWYVMFVEKVLSFRHPLPVSKVLWH PYDYSYGPIGSEFSLLRRVVQYAVSHGAQHFDLQPRCKFKPDIPLFELFDSLSGTVTSLKLLRLLTTLKLQRCCLSADGELGEPFPQFPCLKELVLLDCW WVSKGDDYRPVRLRVCGLELDRLSFLNMHVWELEIFAPKLKYFKLISRGIMEFQQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006319 [exp]	0	1
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	1.7	0.8456
					Lus10027225 [exp]	4.2	0.8228
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	4.9	0.8391
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Lus10035876 [exp]	7.5	0.8163
					Lus10017807 [exp]	7.7	0.7938
AT4G37020			unknown protein		Lus10000435 [exp]	10.2	0.8274
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	10.6	0.8192
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037615 [exp]	11.2	0.8242
AT1G69630			F-box/RNI-like superfamily pro...		Lus10029588 [exp]	15.7	0.7565
AT5G17620			unknown protein		Lus10001340 [exp]	16.3	0.8063

Compare expression of checked genes

Lus10006319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.