Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63110 487 / 3e-170 GPI transamidase subunit PIG-U (.1.2.3) AT1G12730 453 / 5e-157 GPI transamidase subunit PIG-U (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029590 [exp] 646 / 0 AT1G63110 640 / 0.0 GPI transamidase subunit PIG-U (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109200 [exp] 516 / 0 AT1G63110 550 / 0.0 GPI transamidase subunit PIG-U (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF06728 [flax] [poplar] PIG-U GPI transamidase subunit PIG-U
Representative CDS sequence Show only first row Show all	>Lus10006320 pacid=23178358 polypeptide=Lus10006320 locus=Lus10006320.g ID=Lus10006320.BGIv1.0 annot-version=v1.0 ATGGCGAAGGTCAATAAAGAAGAGGAAAGCAAAACGAAACCCCACGAAGCAGGAGGTGGTGAAGGAGTAGAAGGAGGAGGAGGTTTCTGGAAATGGGCAG TGTTCGCCGTGATCTTCCGACTGATCCTCATTTACTTCCCGGGAAATCTCAACTTGTCTTCTCGGCCGGAAGTCTCCACTCCTCTCACTTCCCTTCGTCG CTTGGCAGAGGGGTACTGGTTGAAGCAATCGTCGATGTCTCCTTACGCAGGATCCATGTACCATGGTTCTCCATTGTTGCTCTCTGTTCTTGGGCCTCTC ACTGTCAAAAGTTTGGTTTTTGTCCTTGCAGACTTAATCAGTGCTATTCTCATCCGTGCTACTGGTCAGAAACTACAGATGTCGTATAGGAAGCACTTGT CGTCACTTAATCTGCTTGCTAAATCCACAGATTCAGGCACACATTCATCTGGAGATATAGCTGCTGTTGTATACTTATGGAATCCTTTCACAATCGTTGC CTGTGTGGGTTCATCGACATCTCCTATAGAAAATCTTTTTACCATTCTGACTCTTTATGGAGCTGCTACAGGGCTAGCACCTCTAGCAGCTTTCGGTTGG GTCATCGCAACTCATTTGTCCTTATATCCTGCAGTTCTAATCATACCGGTGATTCTCTTGCTGGGATATGGTCCAGATGCTCCTCCTAGTAAGTTGTTCC AATGCGAGGAATATGGTAAAGATGGAAAGAACCGATCAAAGCAAGAAATAATCTTTTCTTGGAGAAGAGTGTTGCATTTGTTAGTCTGGACTTCACTTTG GTCAGTATATGTGTTGTTCCTATGCAGTATATCTGTCAAGCAGTACGGCAGTCTGCAGGAAATGTTTCAAAGAACTTATGGATTCATACTTACTGTGGAA GATCTGTCCCCAAATATTGGTGTTCTGTGGTACTTCTTTGCTGAAGTTTTTGACTTCTTCCGTGATTTCTTCTTGATCGTCTTCCATTCAAATATTCTAC TCATGATAATCCCATTGGCGATACGGCTAAAGCACCGGCCTTGCTTCCTTGCTTTCATCTACGTTGCCATTTCTTCAATGCTTAAATCATATCCCTCAGT TGGCGATTCGGCTCTGTATTTAGGCCTCTTGGGATTATTTCTGGATGAATTAGCTGATATGCAGTTTTCTTTCTTCCTCTTCTGTGGATACGTCGGAGTA TCCCTACTTAGCCCAGTGATGCATAATCTTTGGATTTGGAGGGGCACTGGCAATGCAAACTTCTACTATGCAACTGCAATGGCCTACGCTTGCTTGCAGA TTGTTTTGGTGGTCGAGAGTGTAAGCTCGATGCTCAACCACGATAGGAAGCTGACGAAGCTCTCTACCTCAAAGCTTCAAAAACAAAGCTGA
AA sequence Show only first row Show all	>Lus10006320 pacid=23178358 polypeptide=Lus10006320 locus=Lus10006320.g ID=Lus10006320.BGIv1.0 annot-version=v1.0 MAKVNKEEESKTKPHEAGGGEGVEGGGGFWKWAVFAVIFRLILIYFPGNLNLSSRPEVSTPLTSLRRLAEGYWLKQSSMSPYAGSMYHGSPLLLSVLGPL TVKSLVFVLADLISAILIRATGQKLQMSYRKHLSSLNLLAKSTDSGTHSSGDIAAVVYLWNPFTIVACVGSSTSPIENLFTILTLYGAATGLAPLAAFGW VIATHLSLYPAVLIIPVILLLGYGPDAPPSKLFQCEEYGKDGKNRSKQEIIFSWRRVLHLLVWTSLWSVYVLFLCSISVKQYGSLQEMFQRTYGFILTVE DLSPNIGVLWYFFAEVFDFFRDFFLIVFHSNILLMIIPLAIRLKHRPCFLAFIYVAISSMLKSYPSVGDSALYLGLLGLFLDELADMQFSFFLFCGYVGV SLLSPVMHNLWIWRGTGNANFYYATAMAYACLQIVLVVESVSSMLNHDRKLTKLSTSKLQKQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63110			GPI transamidase subunit PIG-U...		Lus10006320 [exp]	0	1
AT5G51220			ubiquinol-cytochrome C chapero...		Lus10042991 [exp]	1.0	0.8532
AT4G23540			ARM repeat superfamily protein...		Lus10031065 [exp]	7.1	0.8478
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10037308 [exp]	15.5	0.7939
AT1G42440			unknown protein		Lus10013232 [exp]	16.4	0.8281
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	17.8	0.7893
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	20.5	0.7929
AT2G40430			unknown protein		Lus10037530 [exp]	27.2	0.7779
AT3G49725			GTP-binding protein, HflX (.1)		Lus10018404 [exp]	27.8	0.7518
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	28.2	0.7652
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10014260 [exp]	30.3	0.7803

Compare expression of checked genes

Lus10006320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.