Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11740 379 / 5e-125 SAY1 Ubiquitin-like superfamily protein (.1) AT4G23040 350 / 4e-114 Ubiquitin-like superfamily protein (.1) AT4G00752 138 / 4e-35 UBX domain-containing protein (.1) AT4G10790 55 / 9e-08 UBX domain-containing protein (.1) AT2G43210 47 / 4e-05 Ubiquitin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029591 [exp] 882 / 0 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10041365 [exp] 212 / 6e-62 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1) Lus10036564 [exp] 201 / 6e-58 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1) Lus10027684 [exp] 59 / 3e-09 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10017317 [exp] 49 / 1e-05 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1) Lus10026717 [exp] 48 / 2e-05 AT2G43210 338 / 8e-111 Ubiquitin-like superfamily protein (.1.2) Lus10026718 [exp] 48 / 2e-05 AT2G43210 341 / 8e-112 Ubiquitin-like superfamily protein (.1.2) Lus10003214 [exp] 47 / 4e-05 AT4G10790 525 / 0.0 UBX domain-containing protein (.1) Lus10025504 [exp] 46 / 8e-05 AT2G43210 355 / 1e-117 Ubiquitin-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122300 [exp] 546 / 0 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1) Potri.001G109500 [exp] 515 / 1e-177 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1) Potri.014G075600 [exp] 232 / 2e-69 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1) Potri.015G080200 [exp] 66 / 4e-11 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1) Potri.003G145200 [exp] 53 / 4e-07 AT4G10790 552 / 0.0 UBX domain-containing protein (.1) Potri.007G123800 [exp] 53 / 5e-07 AT2G43210 330 / 6e-108 Ubiquitin-like superfamily protein (.1.2) Potri.017G036600 [exp] 52 / 8e-07 AT2G43210 369 / 5e-122 Ubiquitin-like superfamily protein (.1.2) Potri.001G085600 [exp] 52 / 1e-06 AT4G10790 520 / 0.0 UBX domain-containing protein (.1) Potri.008G142800 [exp] 46 / 5e-05 AT1G14570 541 / 0.0 UBX domain-containing protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10006321 pacid=23178384 polypeptide=Lus10006321 locus=Lus10006321.g ID=Lus10006321.BGIv1.0 annot-version=v1.0 ATGGCGACTCCCGAACAGGAAGCAATCAACACATTCATCAGCATCACCGGCGCCACCGAATCCGTCGCCGTCCAGAGACTCCAGGTGCTAAAGTTTACAT ACGCTAATTGCGTTGGACTAAAGTATCATCCATCTTCTCCGATTCAGGAACATAGTGGTGATCTCAATGCTGCTGTCAATGCACATTTCACTGAAGGAGA CAGAAGCAGCTTGAACCCGCCATCTGTTCCTCCTCATGAAGATGACATCATGGATATAGATGATCCAATAGAAACTGCGCCCTCAAGAAATCCTTTGTCT CTTCTGTCTGATCCAGCTGTTGTAAACCCATTTGCACTTCTCGATCCGCAATTCCGTAGAAGCTTCTTCGAGGGCGGTTCGGATTTTATGAACCGCGGAC CATTTGTTACTCCACCAAGACAGGCGAGAGAGATACCCATAGAGATCAAGGATACCCCTGATGCTTCTGGCCGTTCTGCTCGTGGTCCTGTTATCGAGGA TGTTACTGGAACTGACTATGCACATGAATCTGGCATCCGTGGGACTGTAATTGTTAGCGACGATGAAGAAGATAATGGCGATGTCATTCTTCCCAGCCTT AATACAACTGCTGCTCGACGAGATGACCAAGATATAGATGTTTTAGGCGGCACTTGTAATGATATGCCAAGGCCTAGTGCACCATTACCTGATAGCTCAC TGGAATATGGCAATGACATAGAAGAAGAGATGGTTAGGGCAGCCATTGAGGCTTCCAAACGTGAGGCTGAGTTGGCAGAGCAAGAGAAGGCATTGCGTGA GCGTAAGGGAAAAGTTGGAGTATCGGAAGTCGGAGCATCTGAGCCTGTGAATGTAATTGCACCTTCCAATGGAAGGTTAGACAAAGGTGGATCATTTATT GAGGATGAAGTTGAAGATGTGGAGGAGCAGCCACTGGTCAATCGCAGATCGAGAAATGCATCTTCAAGCTCTATGGAATCTGCCAAAGATGTAGCTACTG AGTCCGACCTGCCATCAAGTCCCATAGACAACAACCCCATCATTCAAACTCAGACAAATGGGAATACTTTCCCTGAGGAGTGGGGTGGCATTTCGTCCGA GGAGCACGATGAAGCAGTGATGCTCGAGGCAGCCATGTTTGGGGGAGTTCCTGAGGGATCCGGATATCAGTTCCCTTATGCACCTCATCAATTCATGCAA GGAGAAAGCCCTTACCCTCGGCCGGCACCACGTCCTCCATCTCCCTCTTTAGAAGCTCAACGCCTGATCCGTGAACAACAGGATGATGAGTATCTTGCTT CATTGGCTGCTGATAGAGAGAAAGAGATGAAGGCCCTGGAGGAAGTTGAAGCACGGCGTTTGCAAGAAGAAGCAGCCAGGAAAGCTGCTCTTGAAGAAGA GAAACTCAAAGAGGAAGAATGCCGCAGGAAGTTGGAGGAAGAACAGGACATGGAGAGACAGTTAGCTGCCAAAGAAGCTTCACTACCTCAAGAGCCAACT CCCGATGAAGAGAGTGCTGTAACACTTTTGGTGCGCATGCCTGATGGCACACGCCATGGCCGCCGGTTTCTCAAGTCTGACCGCTTGGAGTCCCTCTTCG ACTTCATTGATGTCACCAGAGTCGTCAAGCCTGGCACTTACCGACTGGTGAGGCCATACCCTAGGCAAGCCTTCAGCGATGGACATAGCGCCCTCACGTT GACCGAACTCGGCCTGACCAGCAAACAAGAAGCCTTATTTCTGGAGCTGATCTAG
AA sequence Show only first row Show all	>Lus10006321 pacid=23178384 polypeptide=Lus10006321 locus=Lus10006321.g ID=Lus10006321.BGIv1.0 annot-version=v1.0 MATPEQEAINTFISITGATESVAVQRLQVLKFTYANCVGLKYHPSSPIQEHSGDLNAAVNAHFTEGDRSSLNPPSVPPHEDDIMDIDDPIETAPSRNPLS LLSDPAVVNPFALLDPQFRRSFFEGGSDFMNRGPFVTPPRQAREIPIEIKDTPDASGRSARGPVIEDVTGTDYAHESGIRGTVIVSDDEEDNGDVILPSL NTTAARRDDQDIDVLGGTCNDMPRPSAPLPDSSLEYGNDIEEEMVRAAIEASKREAELAEQEKALRERKGKVGVSEVGASEPVNVIAPSNGRLDKGGSFI EDEVEDVEEQPLVNRRSRNASSSSMESAKDVATESDLPSSPIDNNPIIQTQTNGNTFPEEWGGISSEEHDEAVMLEAAMFGGVPEGSGYQFPYAPHQFMQ GESPYPRPAPRPPSPSLEAQRLIREQQDDEYLASLAADREKEMKALEEVEARRLQEEAARKAALEEEKLKEEECRRKLEEEQDMERQLAAKEASLPQEPT PDEESAVTLLVRMPDGTRHGRRFLKSDRLESLFDFIDVTRVVKPGTYRLVRPYPRQAFSDGHSALTLTELGLTSKQEALFLELI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10006321 [exp]	0	1
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	2.2	0.8908
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	3.2	0.8834
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	4.9	0.8738
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	6.3	0.8697
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10039861 [exp]	6.5	0.8052
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	8.7	0.8711
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	9.5	0.8447
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	15.0	0.8375
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10027491 [exp]	17.8	0.8458
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028725 [exp]	23.0	0.8303

Compare expression of checked genes

Lus10006321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.