Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33720 342 / 3e-112 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45570 333 / 5e-109 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45550 332 / 1e-108 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 328 / 5e-107 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G61040 323 / 2e-105 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 315 / 5e-102 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT3G52970 309 / 1e-99 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 289 / 1e-91 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G12300 287 / 4e-91 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 285 / 2e-90 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005765 [exp] 402 / 1e-135 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027428 [exp] 401 / 2e-135 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027425 [exp] 390 / 4e-131 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027431 [exp] 386 / 1e-129 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10005766 [exp] 381 / 1e-127 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10005767 [exp] 361 / 8e-120 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027426 [exp] 353 / 5e-117 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027429 [exp] 345 / 2e-113 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10008936 [exp] 333 / 4e-109 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109300 [exp] 587 / 0 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.001G025200 [exp] 471 / 8e-163 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.015G138900 [exp] 467 / 2e-161 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G136800 [exp] 452 / 1e-155 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G137200 [exp] 452 / 2e-155 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.012G136600 [exp] 452 / 3e-155 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.003G118200 [exp] 323 / 3e-105 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 318 / 4e-103 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 317 / 8e-103 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G118500 [exp] 300 / 5e-96 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10006323 pacid=23178366 polypeptide=Lus10006323 locus=Lus10006323.g ID=Lus10006323.BGIv1.0 annot-version=v1.0 ATGGCTCCCAATCAAACTTATCACTGTGTAAACAGCCTTGTCTCCCTTACTGTTACTCTCATTCTATTGCCTCTTCTTCTCCATGTAATACTATTCAGGA AAAAAACTACTCCATCTTCTTCACCAATTCCTCCAGGTCCATACCAATGGCCAATCATAGGAAACATCCTCCAACTAGGAAGCAACCCTCATCACACCTT AACACACCTTGCTCAAACTTATGGCCCTGACCTCTTCTCCCTCAAACTCGGGACTCAACTCCTCGTGGTGGCATCCTCGAAGGCTGCAGCAATCGAGATA CTACGAACCAACGATCAAGTCCTGTCAGGACGGTACGTTCCTGACATGGCACCTAACAAGAGCCCCGAACTCAATGACTTCTCGATAGGATGGGTGCTGG AGTGCAATGACAAGTGGAGGCAGCTGAGGTCACTGTGCAAGGCTGAGCTTTTCTCGGGGAGAGCGCTGGAATCGAAGGCTTGGTTGCGAGAAGGGAAGGC GAAGGAGATGGTCGGTTTCGTCAGGAGGAATGAAGGGAAGGAAGTTAGAGTTAGAGAAGTTGTGACTGCTACTGTTTTCAATATGCTGAGCTGTGTTCTT GTGTCTAAGGACCTTGTGAGCTTGGAGGATGAGAGTTGTTCAAATGGTGGTGGGATGAGTTGTGTTCTCGTCCGGATTGCTGAACTAGCCACGATTCCGA ATGTGTCTGATCTTTATCCGGTGTTCAGCCGGTTCGATCTGCAAGGGTTGAGGAAGAAGGCGATGGAGCTGCACAAGGTTTGTTTCAGGTTGTTTGGAGT CATCATTGAGGAAAGGAGAAGAGAATTGAGAGAAGAAAGAGATTTTCTTGACATCCTTTTGAAGAATGGTTCATGTGATGACCAAATCAATGTTCTGCTT CTGGAGCTACTGTCAGCTGGAACAGACACCAGCAGCTCAACAATTGAGTGGATGATGGCAGAACTGATAAAGAATCCAAAATGCATGAAAAGGGTGCAAC AAGAAATCTCGTCTGCAATGGAATCAAAGAATGCTGCAATCAAAGAATCATCAGTAGCAAACTTACCATACCTTCAAGCTTGTTTCAAAGAAACCCTGAG GCTGCACCCACCAGGGCCATTCCTCCTCCCACACCGTGCCATTTCGTCCTGCAAAGTCATGAAACACAGCATCCCAAAGAACTCACAGGTAGTGGTGAAC TTCTGGGCAATCGGACGAGACCCCAAAAACTGGAAAGAGCCCTTGAGATTCAGTCCAGAGAGGTTCCTGAACTCAACTCTGGACTTCAAAGGGAATGACT TTGAGTTCATACCTTTTGGTTCAGGAAGGAGAATTTGCCCTGGTCTGTCCATGGCTACAAAGCATGCTTCCCTAATTGTTGCTTCTTTGATCCACTATTT TGATTGGTCACTTCCAGATGGAGTTGAATTAGATATGAGAGACAAGTATGGCTTAACTTTGAGGAAGAAACAGCCCCTTATTCTCATCCCTAGGGCTAAC CATTGA
AA sequence Show only first row Show all	>Lus10006323 pacid=23178366 polypeptide=Lus10006323 locus=Lus10006323.g ID=Lus10006323.BGIv1.0 annot-version=v1.0 MAPNQTYHCVNSLVSLTVTLILLPLLLHVILFRKKTTPSSSPIPPGPYQWPIIGNILQLGSNPHHTLTHLAQTYGPDLFSLKLGTQLLVVASSKAAAIEI LRTNDQVLSGRYVPDMAPNKSPELNDFSIGWVLECNDKWRQLRSLCKAELFSGRALESKAWLREGKAKEMVGFVRRNEGKEVRVREVVTATVFNMLSCVL VSKDLVSLEDESCSNGGGMSCVLVRIAELATIPNVSDLYPVFSRFDLQGLRKKAMELHKVCFRLFGVIIEERRRELREERDFLDILLKNGSCDDQINVLL LELLSAGTDTSSSTIEWMMAELIKNPKCMKRVQQEISSAMESKNAAIKESSVANLPYLQACFKETLRLHPPGPFLLPHRAISSCKVMKHSIPKNSQVVVN FWAIGRDPKNWKEPLRFSPERFLNSTLDFKGNDFEFIPFGSGRRICPGLSMATKHASLIVASLIHYFDWSLPDGVELDMRDKYGLTLRKKQPLILIPRAN H

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Lus10006323 [exp]	0	1
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	2.6	0.8934
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	4.5	0.8498
AT5G24130			unknown protein		Lus10039332 [exp]	6.7	0.8257
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	8.9	0.7985
AT5G24130			unknown protein		Lus10039333 [exp]	11.8	0.7604
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021540 [exp]	13.1	0.8097
AT1G70780			unknown protein		Lus10039287 [exp]	14.7	0.7693
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	15.5	0.7693
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	16.2	0.7693
					Lus10027606 [exp]	19.0	0.7542

Compare expression of checked genes

Lus10006323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.