Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62090 276 / 1e-83 SLK2 SEUSS-like 2 (.1.2) AT4G25520 266 / 2e-80 SLK1 SEUSS-like 1 (.1) AT4G25515 264 / 4e-80 SLK3 SEUSS-like 3 (.1) AT1G43850 237 / 1e-68 SEU SEUSS transcriptional co-regulator (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029594 [exp] 802 / 0 AT1G43850 140 / 9e-35 SEUSS transcriptional co-regulator (.1.2) Lus10000198 [exp] 710 / 0 AT5G62090 174 / 8e-48 SEUSS-like 2 (.1.2) Lus10038880 [exp] 279 / 4e-84 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2) Lus10042785 [exp] 243 / 7e-71 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10029756 [exp] 243 / 2e-70 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10028635 [exp] 233 / 1e-68 AT1G43850 518 / 5e-174 SEUSS transcriptional co-regulator (.1.2) Lus10015002 [exp] 234 / 3e-68 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2) Lus10018933 [exp] 188 / 4e-53 AT1G43850 435 / 1e-143 SEUSS transcriptional co-regulator (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121800 [exp] 324 / 2e-102 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2) Potri.015G138500 [exp] 282 / 2e-85 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2) Potri.012G136100 [exp] 280 / 1e-84 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2) Potri.002G072900 [exp] 243 / 1e-70 AT1G43850 569 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G186900 [exp] 236 / 3e-68 AT1G43850 612 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.007G109400 [exp] 223 / 1e-63 AT1G43850 546 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G058501 [exp] 76 / 1e-14 AT1G43850 158 / 2e-41 SEUSS transcriptional co-regulator (.1.2) Potri.013G089900 [exp] 61 / 1e-10 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006324 pacid=23178383 polypeptide=Lus10006324 locus=Lus10006324.g ID=Lus10006324.BGIv1.0 annot-version=v1.0 ATGCAGCATCTACTGCAGCAGAATTCCGTTTCTCTGCAGCCACAAGTTTGCATTCCTCTGCTGGAGAATTCGAGCCAGATGAGAACATTTCAGGCATCGC CACATTTACCGGGAGTTGTCTTGAAGCAACTCCAGCAGGAGAAACAGGTAAAGGAATACCTTCAACAACTTGCCCGCAAACGTGCACACCCTGCTCCACA GCTTTTCAATGGCAACGTATGCTACCGCCGGTTAATGCAGTACATGTATCATCTTCAGCATAGGCCACCAAGCAATGATATATGCTACTGGAGGAAGTTT GTCGCAGAGTATTTTGCACCATGTGCCAAGAAAAGGTGGTGCTTGTCTAAATGTGATAGCGTTCAGGCAGCTATGAACAATTCGTCTAATGAGTTAACCT TGTTTGGCCAGGATGCATGGCACTGTGAGCTATGTGGTTCTACATCTGGAAGAGGCTTCGAGGCATCCTTTGAAGTTCTCCCAAGGCTCACCAAGACACA GTTCGAGACCGGAGTTACAGATGAACTTTTATACCTCGACTTTCCTCAAGAGTGTAGGCTCCTTTCTGGATCAATGGTCCTGGAATATGGAAAAGCAGTG CACAAGACAGTCTACAATCAGTTCCATGTCGTGCGTGAGGGCAAACTACGGATTATCTTCACTCAAGATCTAAAGGTTAATGATTTCATCCGTACTGCAC AGAAGTATCAGAAAGCAATTGATGGTGGTGGACGAGGAAGTACCCCTTCTAATCTACGAGAAAATGGCAATGTGTTGTTGGCAGCTGGATGCAGTCTTGA GCGAAGTTTCGAATCGCAGCTTGCTGGCGACATAGGTTTTCCCAAGCGATACATCCGATGCTTGCAGATTGCTGAAATAGTGAATAGTATGAAAGACTTG ATGACTTTCAGTTGCCAGAACAAAATTGGAGCTATAGAGAGTTTGAAGACTTACACTGAGAAGTTCTCGGCGAATGTCCAGGAACCAACCGAGGAATCTG ACTTGCTGAGAAAGGATGACCGCATAATCAAGGGAAAAGGTAGAGTCTTTACCACAGCCGAAGAGGCAGCTTTGGCCGATTATGGAAGTTACATGAAATT ACTGAGTCAAGCATCCGATCTTAATGTAGCTGGATTCGCAGAACCTTCTTATCTATACAAACAGTTCAATCAAGGTTCTCAGACATCGGTCCCAGAGTTC ATCCAAAACGTCCCTTCCTCAAACTACCCTACCTCTGAGAGCAACATCATACAAGAGCATATGATGAAGATACTACAGAGAGCAAGCACCAAGAGCCAGA ACACAGGTTGGACCGAGAGAGAAGTGGTAAACAACACAATGGACGACATGTTTGCTGGTTTGCCAACAACATATAGTTCCTGGAATAGGCTGCCTTCTGA TCACTCATCATCAGCACAGAACTGTACCGCTGCCAGCAGCTGGGAGTCCTCGAGTGATCGTAGTTTCATCAACAAGGGAAGCAACCATGTCGAAACTCTT AATCATCAGTCCGAGGAATACGGAGCTTTCCGCAAGCTATTGGAGAACAGTATGTCTGATGGTTCATTTGGGGACTCCACAAGCTTCGGTTGGAAGGGAT GA
AA sequence Show only first row Show all	>Lus10006324 pacid=23178383 polypeptide=Lus10006324 locus=Lus10006324.g ID=Lus10006324.BGIv1.0 annot-version=v1.0 MQHLLQQNSVSLQPQVCIPLLENSSQMRTFQASPHLPGVVLKQLQQEKQVKEYLQQLARKRAHPAPQLFNGNVCYRRLMQYMYHLQHRPPSNDICYWRKF VAEYFAPCAKKRWCLSKCDSVQAAMNNSSNELTLFGQDAWHCELCGSTSGRGFEASFEVLPRLTKTQFETGVTDELLYLDFPQECRLLSGSMVLEYGKAV HKTVYNQFHVVREGKLRIIFTQDLKVNDFIRTAQKYQKAIDGGGRGSTPSNLRENGNVLLAAGCSLERSFESQLAGDIGFPKRYIRCLQIAEIVNSMKDL MTFSCQNKIGAIESLKTYTEKFSANVQEPTEESDLLRKDDRIIKGKGRVFTTAEEAALADYGSYMKLLSQASDLNVAGFAEPSYLYKQFNQGSQTSVPEF IQNVPSSNYPTSESNIIQEHMMKILQRASTKSQNTGWTEREVVNNTMDDMFAGLPTTYSSWNRLPSDHSSSAQNCTAASSWESSSDRSFINKGSNHVETL NHQSEEYGAFRKLLENSMSDGSFGDSTSFGWKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10006324 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029594 [exp]	1.0	0.9342
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10000198 [exp]	5.9	0.7784
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10033378 [exp]	12.7	0.7939
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10003767 [exp]	13.1	0.8416
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	16.0	0.8092
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10005264 [exp]	17.0	0.8242
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	17.5	0.8231
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	18.9	0.8156
AT5G58610			PHD finger transcription facto...		Lus10015266 [exp]	19.4	0.7909
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	21.9	0.7986

Compare expression of checked genes

Lus10006324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.