Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16280 604 / 0 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT5G60990 318 / 2e-102 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 234 / 9e-68 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 215 / 5e-63 DEA(D/H)-box RNA helicase family protein (.1) AT5G65900 211 / 3e-60 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 209 / 6e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G18600 200 / 1e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G33730 199 / 2e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 197 / 2e-55 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT4G00660 195 / 3e-55 ATRH8 RNAhelicase-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029596 [exp] 850 / 0 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10031761 [exp] 322 / 3e-104 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 321 / 6e-104 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10042754 [exp] 240 / 1e-69 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10037646 [exp] 223 / 1e-65 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 223 / 1e-65 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10027240 [exp] 206 / 1e-58 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 205 / 3e-58 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043334 [exp] 201 / 1e-56 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G084700 [exp] 603 / 0 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.007G068800 [exp] 328 / 1e-106 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 305 / 6e-98 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 290 / 4e-92 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G241300 [exp] 238 / 2e-69 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G038300 [exp] 217 / 2e-63 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 211 / 7e-61 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 209 / 3e-60 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 203 / 2e-57 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G250700 [exp] 201 / 8e-57 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10006326 pacid=23178355 polypeptide=Lus10006326 locus=Lus10006326.g ID=Lus10006326.BGIv1.0 annot-version=v1.0 ATGGGCCGCAGTCTAAAGCCCAGACCGGCCCAGCATGTTGCGGAGAAGTCTGTACAGTCCAAAATGAGGCAGCCGCAGCAGCTAAAACCTCTTCCCGCCG GAAACCTTACTCTGCTGCCGCTCCATTCCTCTGTTGTACTTCTTTCTTCTCTCGCCGGTATCTCGGAGCTTCTCCGCCGTCAGCTGGTTTCCCTGCTTCT CCAGCTCAAACCTGCACTGCTGCAAATTTATAACTTGACAGAGTTGCGTACGCAGCTTCAAGTAGGCATGGAAGATCATGAAGAAGAAACCATCGTCGAT CGAGGTTTCCAGCTCTTCTCCAAACCCCCCAAATCCCTGAAAAAATCGAGTCCAGTCGTTAAACCAGAAAGCCCCAGCCTTCCATATGAACTTCCCAAAA TCGAGAAAGAAACATCATCATCATCCGCCGCTTTAGAATCCGACGGCACTTCCTTCGAAGATTTGGGCCTCTCCGACTGGGCAATCCAAACATGCAAGGA GCTCGGCATGAAGCGTCCAACTCCGGTTCAATCTCACTGCATCCCCAAAATACTAGCTGGCCGTGACGTCCTGGGATTGGCCCAGACCGGAAGCGGGAAA ACCGCTGCTTTTGCTCTCCCCATCCTCCACCGTCTGGCGGAGGATCCTTACGGAGTGGCGGCGCTTGTGATGACTCCCACCAGGGAGCTGGCTTTTCAGC TGGCTGAGCAGTTCAAAGCGCTGGGTTCTTCTTTGCAATTGAGGTGTACGGTTGTAGTTGGTGGTATGGATATGCTGAACCAATCTCAGATGTTGATGCG AAGGCCTCATGTCGTCATTGCCACTCCTGGTAGGATCAAGGTCTTGATGGAAGATAATCCTGATTTGCCTGCTGTTTTCTCCAGAACTAAGTTCCTAGTG CTGGATGAAGCGGATAGGCTTTTGGACGCTGGGTTTGAGGCGGAATTGAGAACGGTGTTTCGGTGCTTACCGAAGAATCGACAGACACTTTTGTTTTCTG CAACAATGACGAGTGATTTGGAAACGCTGCTGGAGGTCTCGGCAAATAAGGCGTACTTCTACGAGGCTTATGAGGGGTTTAAGACTGTTGAGACTCTAAA GCAACAATATGTTTTCATACCTAAGAATGTGAAGGAGGTTTATCTGTCTTATATTCTGTCCAGAATGGAAGAGATGGGGATTCGATCAGCTATGATCTTC GTTTCCACTTGCAGGAGTTGCCAACTTCTAAGTTCGCTACTGGAAGTACTTGGCCAGAAGGCTGCAGCCCTACATTCCTACAATGCACAGTCCCTGAGAC TCTCTGCGCTGCACGAATTCAAGGCCGAGAAAGTTCCTGTATTGATTGCAACAGATGTCGCCAGTCGGGGTCTGGACATTCAGACTGTTGATCTCGTTAT AAACTACGATCTTCCAAGATATCCTCGAGACTATGTTCATCGTGTAGGGCGTACTGCAAGAGCAGGCCGGGGAGGGTTAGCTATAAGTTTAGTCACCGAG AATGATGTCCAACTGGTTCACAAGATCGAAGATGTCGTCGGGAAGAAGCTTGAGGAGTTTGAGTGCAAAGAGAAGGAGGTCCTTTCGGAGATTACAAAGG TATACAAGGCTAAACGTGTAGCGACAATGAAGATGATGGATGATGGAATTGACGAAAAGGTTGAAGAAAGGAAGAAGCAGAAGTTGAAAGCATTAGCAGA CAAAGGTTTGCTAACAAAGAAAAAGAAGAGTAACAAGAAACAGAGAACGTCATAA
AA sequence Show only first row Show all	>Lus10006326 pacid=23178355 polypeptide=Lus10006326 locus=Lus10006326.g ID=Lus10006326.BGIv1.0 annot-version=v1.0 MGRSLKPRPAQHVAEKSVQSKMRQPQQLKPLPAGNLTLLPLHSSVVLLSSLAGISELLRRQLVSLLLQLKPALLQIYNLTELRTQLQVGMEDHEEETIVD RGFQLFSKPPKSLKKSSPVVKPESPSLPYELPKIEKETSSSSAALESDGTSFEDLGLSDWAIQTCKELGMKRPTPVQSHCIPKILAGRDVLGLAQTGSGK TAAFALPILHRLAEDPYGVAALVMTPTRELAFQLAEQFKALGSSLQLRCTVVVGGMDMLNQSQMLMRRPHVVIATPGRIKVLMEDNPDLPAVFSRTKFLV LDEADRLLDAGFEAELRTVFRCLPKNRQTLLFSATMTSDLETLLEVSANKAYFYEAYEGFKTVETLKQQYVFIPKNVKEVYLSYILSRMEEMGIRSAMIF VSTCRSCQLLSSLLEVLGQKAAALHSYNAQSLRLSALHEFKAEKVPVLIATDVASRGLDIQTVDLVINYDLPRYPRDYVHRVGRTARAGRGGLAISLVTE NDVQLVHKIEDVVGKKLEEFECKEKEVLSEITKVYKAKRVATMKMMDDGIDEKVEERKKQKLKALADKGLLTKKKKSNKKQRTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10006326 [exp]	0	1
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	7.6	0.8410
AT5G27395			Mitochondrial inner membrane t...		Lus10029978 [exp]	8.1	0.8138
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	8.7	0.8367
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	10.9	0.8389
AT2G18330			AAA-type ATPase family protein...		Lus10041751 [exp]	12.8	0.8345
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10039896 [exp]	14.0	0.8103
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10033332 [exp]	15.5	0.8129
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10030542 [exp]	16.4	0.8306
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10020429 [exp]	23.1	0.8251
AT5G22100			RNA cyclase family protein (.1...		Lus10013351 [exp]	25.5	0.8168

Compare expression of checked genes

Lus10006326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.