Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52060 194 / 2e-60 ATBAG1 BCL-2-associated athanogene 1 (.1) AT5G62100 186 / 5e-58 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3) AT5G07220 171 / 4e-52 ATBAG3 BCL-2-associated athanogene 3 (.1) AT3G51780 134 / 7e-38 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G14360 69 / 2e-14 Ubiquitin-like superfamily protein (.1) AT5G40630 67 / 9e-14 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029598 [exp] 442 / 2e-159 AT5G52060 195 / 8e-61 BCL-2-associated athanogene 1 (.1) Lus10038882 [exp] 206 / 1e-65 AT5G52060 327 / 1e-111 BCL-2-associated athanogene 1 (.1) Lus10015004 [exp] 201 / 3e-63 AT5G52060 333 / 4e-114 BCL-2-associated athanogene 1 (.1) Lus10027420 [exp] 201 / 5e-63 AT5G52060 349 / 6e-120 BCL-2-associated athanogene 1 (.1) Lus10005772 [exp] 162 / 4e-48 AT5G52060 304 / 2e-102 BCL-2-associated athanogene 1 (.1) Lus10023279 [exp] 141 / 4e-41 AT5G07220 196 / 4e-62 BCL-2-associated athanogene 3 (.1) Lus10005051 [exp] 126 / 1e-33 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1) Lus10027822 [exp] 122 / 6e-33 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10003393 [exp] 87 / 2e-20 AT3G51780 180 / 5e-56 BCL-2-associated athanogene 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110300 [exp] 249 / 5e-82 AT5G52060 239 / 2e-76 BCL-2-associated athanogene 1 (.1) Potri.003G121500 [exp] 246 / 2e-81 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1) Potri.012G133400 [exp] 218 / 8e-70 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.015G135500 [exp] 213 / 1e-67 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.001G358200 [exp] 143 / 1e-41 AT5G07220 207 / 9e-66 BCL-2-associated athanogene 3 (.1) Potri.009G074300 [exp] 142 / 4e-41 AT3G51780 196 / 4e-62 BCL-2-associated athanogene 4 (.1) Potri.001G279500 [exp] 141 / 6e-41 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.001G339100 [exp] 81 / 1e-18 AT5G14360 166 / 6e-53 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10006328 pacid=23178336 polypeptide=Lus10006328 locus=Lus10006328.g ID=Lus10006328.BGIv1.0 annot-version=v1.0 ATGGAGGAGGCAATCAAGTCAATGATGAAAGTTGAAGAATTGGAAATCAGGCCAGGAGGAATGTTGGTTCAGAAGAGGGATTCTTCTGAATCCAGAAATC ATAGTTACAGCAACGACAATTCAATTGTTGTGCCTGTGATCAGAGTCAAGGTCAAATTTGGATCCTCATATCACAATGTTTCCATCACTTCTCAAGCTAG CTTTGGGGAGCTGAAGAAAATGTTGGCAGAAGTAACAAAAGTTCACCATCAGGACCAGAAGTTGATGTACAAGAAGAAAGAGAAGGACTCCAGGATGTTT TTGGACATTGAAAGAGTGAAAGATGGATCCAAACTCGTTCTTATTGAGGACATTACTAGTCGCGAAAGGCGGTGCCTCGAGATGATCAGAACCTCTAGGC TACAGAAGGTTTTAAAATCCATTGACCAAATAACCAGAGAAGTTGACACACTTGTTCCCAAGGTGACATCCTTGGAAGCAACAAGCTGTGGAGGAGGGAT AGTCGCGGAGATTGACATCGATGATCTGACAGAAGCATCGATGTCGAGACTGGTGGAGCTGGATGGGATTCTGGTAGTGGATGGAACCTTAAAGTTGCAG AAGACAAATCAGGAAAGGAGGCTTCAGAAGTGCATAGAGACTCTTGATAAGCTGAAGCCAGAGACTTGTTCTAGCAATCAGAACAGCAAAACGAAGCAAA GGCAAAAGCTTTCTGAAGCAGCTGTGGTCACCACCACAACCAAATGGGAAATCTTTGATTGA
AA sequence Show only first row Show all	>Lus10006328 pacid=23178336 polypeptide=Lus10006328 locus=Lus10006328.g ID=Lus10006328.BGIv1.0 annot-version=v1.0 MEEAIKSMMKVEELEIRPGGMLVQKRDSSESRNHSYSNDNSIVVPVIRVKVKFGSSYHNVSITSQASFGELKKMLAEVTKVHHQDQKLMYKKKEKDSRMF LDIERVKDGSKLVLIEDITSRERRCLEMIRTSRLQKVLKSIDQITREVDTLVPKVTSLEATSCGGGIVAEIDIDDLTEASMSRLVELDGILVVDGTLKLQ KTNQERRLQKCIETLDKLKPETCSSNQNSKTKQRQKLSEAAVVTTTTKWEIFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10006328 [exp]	0	1
AT4G16444			unknown protein		Lus10016696 [exp]	4.2	0.7331
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10029598 [exp]	7.5	0.7253
AT3G14430			unknown protein		Lus10030201 [exp]	8.1	0.7492
AT5G42850			Thioredoxin superfamily protei...		Lus10037477 [exp]	8.2	0.7595
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10020392 [exp]	8.8	0.7675
AT1G50740			Transmembrane proteins 14C (.1...		Lus10019624 [exp]	12.2	0.7540
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10010388 [exp]	17.1	0.7127
AT4G13200			unknown protein		Lus10022803 [exp]	17.1	0.7376
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10041518 [exp]	17.3	0.6736
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10023188 [exp]	21.6	0.7514

Compare expression of checked genes

Lus10006328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.