Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78990 380 / 3e-129 HXXXD-type acyl-transferase family protein (.1) AT1G32910 376 / 1e-127 HXXXD-type acyl-transferase family protein (.1) AT5G16410 362 / 1e-121 HXXXD-type acyl-transferase family protein (.1) AT1G31490 152 / 2e-41 HXXXD-type acyl-transferase family protein (.1) AT3G03480 80 / 4e-16 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 77 / 3e-15 HXXXD-type acyl-transferase family protein (.1.2) AT5G57840 75 / 1e-14 HXXXD-type acyl-transferase family protein (.1) AT5G17540 73 / 8e-14 HXXXD-type acyl-transferase family protein (.1) AT1G24430 69 / 2e-12 HXXXD-type acyl-transferase family protein (.1) AT5G47950 68 / 4e-12 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033327 [exp] 506 / 5e-179 AT1G32910 485 / 8e-170 HXXXD-type acyl-transferase family protein (.1) Lus10034786 [exp] 354 / 2e-120 AT1G32910 334 / 7e-112 HXXXD-type acyl-transferase family protein (.1) Lus10000557 [exp] 180 / 2e-54 AT1G78990 168 / 2e-65 HXXXD-type acyl-transferase family protein (.1) Lus10023806 [exp] 166 / 1e-46 AT1G31490 511 / 3e-180 HXXXD-type acyl-transferase family protein (.1) Lus10035190 [exp] 87 / 2e-18 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 82 / 1e-16 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10010786 [exp] 78 / 2e-15 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 76 / 8e-15 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10032020 [exp] 76 / 1e-14 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003800 [exp] 393 / 8e-134 AT1G32910 533 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G128100 [exp] 164 / 5e-46 AT1G31490 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.018G104700 [exp] 83 / 3e-17 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 79 / 1e-15 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.014G166600 [exp] 77 / 3e-15 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 76 / 1e-14 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.005G028000 [exp] 75 / 2e-14 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G310000 [exp] 74 / 4e-14 AT3G26040 249 / 5e-78 HXXXD-type acyl-transferase family protein (.1) Potri.018G105500 [exp] 71 / 6e-13 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.004G017600 [exp] 69 / 1e-12 AT3G26040 257 / 4e-81 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10006333 pacid=23178372 polypeptide=Lus10006333 locus=Lus10006333.g ID=Lus10006333.BGIv1.0 annot-version=v1.0 ATGCCTCCGGCCGGCGGTAGAAACAGCTTCACGGTGACGACGGGGAAGAAGGAGGTGGTGGCAGCGGTGCTTCCGGTGCAGGAGCATTGGCTACCGCTCT CCAACATCGACCTCCTCCTTCCACCGATCGACGTTGGGGTCTTCTTCTGTTACTCACCGGATGACGGTGGTGCAGTGGCGGCGGTGGGGAAACTGAAGAA GGGGCTTGCGCAGGCGCTCGTGGCGTACTATGCCTTCGCCGGAGAGGTGGTGATGAACTCCGGCGGCGAACCGGAGATTCTGTGCAACAACCGTGGAGTT GACTTCTGGGAGGCTTATGCTGACGTGGAGCTCATGGAGCTTGACTTGTATAACGCCGACGATGCCGTTGAAGGCAAGCTTGTCTCCGTTAAGAAACACG GCGTTTTCGCCGTTCAGGTGACAGAACTGAAATGCGGGGGGATAGTGGTGGGATGTTCCTTCGACCACCGCATCGCGGACGCCTATTCATGCAACATGTT CCTCGTGGCATGGGCCGAGGCGACTGGATCTCGGCCCATATCCTCCCCACCGCCTTCCTTTCGTCGATCGTTACTCAACCCTCGTCGTGCCCTTACACTA GACCCCACCTTCGACGACATGTACGTCCTGCTTTCAACCCTCCCTCCGTCGGCTCCTTCTTCCTCCGCCGACCCTGTCCTCCTCAGCCGCATCTACTACG TCAAGTCCGAGGACCTAGCCAGCCTCCAATCCATCACCTCCAGAACCAAGCTCGTATCCTTCTCCGCATTCCTCTGGCAGCTCGTCGCCAAGTCATCCCA CCCCGACGTCATCGCCAAGATGGGGATCGTGGTCAACGGACGATTCTTCGCTGAGCAACGTGGCCGATGGGGTCCACGAGTTCTTGGAGAAAGGGACGAA CGAGGACCATTTTTGGGTTTGGTAGACTGGGTGGAGGCCCACAGGCCTGAACCCGCGATCTCAAGGATTTACGATAGCGGGGCCGCTAAAGGCCCCGAGT TTGTGGTTTCATCGGGTCGGGGATTCCCTGTCGGGGAGGTAGATTTCGGGTGGGGTCGTCCGGTGTTCGGGTCGTACCATTTCCCGTGGGGAGGGAGTGC AGGTTACGTGATGCCGATGCCGAGTCCGAAGAAGGAATCTGGCGATTGGGTGGTGTACATGCATTTGTTGGAGGCGCAGTTGGATGTTATTGAGAAGGAA GGTGCATCTTTTTTCAGACCCTTCAACTGGGACTACCTCATGTAA
AA sequence Show only first row Show all	>Lus10006333 pacid=23178372 polypeptide=Lus10006333 locus=Lus10006333.g ID=Lus10006333.BGIv1.0 annot-version=v1.0 MPPAGGRNSFTVTTGKKEVVAAVLPVQEHWLPLSNIDLLLPPIDVGVFFCYSPDDGGAVAAVGKLKKGLAQALVAYYAFAGEVVMNSGGEPEILCNNRGV DFWEAYADVELMELDLYNADDAVEGKLVSVKKHGVFAVQVTELKCGGIVVGCSFDHRIADAYSCNMFLVAWAEATGSRPISSPPPSFRRSLLNPRRALTL DPTFDDMYVLLSTLPPSAPSSSADPVLLSRIYYVKSEDLASLQSITSRTKLVSFSAFLWQLVAKSSHPDVIAKMGIVVNGRFFAEQRGRWGPRVLGERDE RGPFLGLVDWVEAHRPEPAISRIYDSGAAKGPEFVVSSGRGFPVGEVDFGWGRPVFGSYHFPWGGSAGYVMPMPSPKKESGDWVVYMHLLEAQLDVIEKE GASFFRPFNWDYLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10006333 [exp]	0	1
					Lus10007605 [exp]	2.0	0.7578
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035234 [exp]	3.5	0.7405
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004855 [exp]	4.4	0.7631
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004438 [exp]	8.1	0.7465
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	13.0	0.6900
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	14.3	0.6900
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	15.4	0.6900
					Lus10033096 [exp]	16.5	0.6900
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	17.5	0.6821
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	18.7	0.6727

Compare expression of checked genes

Lus10006333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.