Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60430 332 / 2e-118 ARPC3 actin-related protein C3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018909 [exp] 360 / 3e-129 AT1G60430 330 / 9e-118 actin-related protein C3 (.1.2) Lus10029603 [exp] 361 / 6e-128 AT1G60430 329 / 1e-115 actin-related protein C3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G123100 [exp] 330 / 2e-117 AT1G60430 332 / 2e-118 actin-related protein C3 (.1.2) Potri.006G063400 [exp] 322 / 4e-114 AT1G60430 322 / 2e-114 actin-related protein C3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04062 [flax] [poplar] P21-Arc ARP2/3 complex ARPC3 (21 kDa) subunit
Representative CDS sequence Show only first row Show all	>Lus10006335 pacid=23178338 polypeptide=Lus10006335 locus=Lus10006335.g ID=Lus10006335.BGIv1.0 annot-version=v1.0 ATGCAGCAACAACTATATCAGAGCTTTTCGCCTCGGGAGTTTGAAGAAATGGTTTATCACTCCAGTTTCGTGGATGATGATGGAGTTACAAAAGCTTGCG GCTGCCCATTACTTCCTTTGAAATCCCATATTAAGGGTCCTGCTCCAACTTCAAATCAAGATAAAACGGATATAGTCGACGAAGCGATAACCTTCTTTCG TGCAAATGTCTTCTTCAGAAACTTCGACATCAAGAGCCCTGCAGATAAGCTTCTAATCTACTTGACATTCTACATCAACGTTGCTTTGAAGAGGTTAGAA GGTTGCAGAACTTTGGCTGTAGGTACTAAAGCCATCATTAACTTGGGTTTGGAGAATGTTCCAGTCCCGGGAGAGTCTGGTTTCCCTTTTCCTGGCCTTT TCATTGAACCTCAATCTCACAACGAAGCAGAGCTCTTCAGGGATTATCTGAAGCAGATAAGAGAAGAAACAAGTGGGAGGTTGTTGAGTGTTGCCTATAG ACACAACGGCACTCCGAACAAATGGTGGATTGCATTTGCCAAGAGGAAGTTCATGAATGTCATTGCTCTTTGA
AA sequence Show only first row Show all	>Lus10006335 pacid=23178338 polypeptide=Lus10006335 locus=Lus10006335.g ID=Lus10006335.BGIv1.0 annot-version=v1.0 MQQQLYQSFSPREFEEMVYHSSFVDDDGVTKACGCPLLPLKSHIKGPAPTSNQDKTDIVDEAITFFRANVFFRNFDIKSPADKLLIYLTFYINVALKRLE GCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFIEPQSHNEAELFRDYLKQIREETSGRLLSVAYRHNGTPNKWWIAFAKRKFMNVIAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10006335 [exp]	0	1
AT4G21215			unknown protein		Lus10018373 [exp]	1.7	0.8660
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10031575 [exp]	2.4	0.8535
AT4G35980			unknown protein		Lus10041889 [exp]	4.2	0.8562
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032667 [exp]	10.1	0.8038
AT5G12240			unknown protein		Lus10026824 [exp]	11.7	0.8422
AT4G34960			Cyclophilin-like peptidyl-prol...		Lus10025052 [exp]	14.4	0.8287
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014460 [exp]	14.5	0.8312
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10032440 [exp]	14.7	0.8084
AT1G03250			unknown protein		Lus10012370 [exp]	17.0	0.8377
AT3G03890			FMN binding (.1.2)		Lus10013617 [exp]	17.4	0.8172

Compare expression of checked genes

Lus10006335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.