Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23020 88 / 2e-18 unknown protein AT4G00770 47 / 2e-05 unknown protein AT4G11780 45 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029604 [exp] 494 / 3e-172 AT4G23020 114 / 4e-27 unknown protein Lus10024488 [exp] 115 / 2e-27 AT4G11780 81 / 4e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110900 [exp] 122 / 4e-30 AT4G23020 135 / 9e-35 unknown protein Potri.003G121100 [exp] 112 / 1e-26 AT4G23020 94 / 2e-20 unknown protein Potri.002G152700 [exp] 45 / 7e-05 AT4G00770 114 / 1e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006336 pacid=23178368 polypeptide=Lus10006336 locus=Lus10006336.g ID=Lus10006336.BGIv1.0 annot-version=v1.0 ATGGCTAATTCTTCCTTAACTCGAAGGCCATTGGTCAAAGAAACAACGGGAGGCCCTTTGATGCTGAGAGACTTCCTCATCGAAGATTTCAGCTCCTGCT CATCCAACGGCTTCAAATCCTTCCCCCGCCGCCGCCAATGCTGCCCTTCCACCCCACGATTAATGCTCCCCCCAGTCGACCGGAAATCGAAATTGAAATT GAAATCGAAACCCGCCCGCCATTCCAAATCCAGCTCCAAACTCTTCCGCAAGGCGTCCAAGGCCGTCATCAGAGCCGTCAAATCTCTGCCGCTACGTTCC TCCGCCGCCGCCGCCGGCGGCGGGGCGGGCTGGCGGAGATTCGCCACTGTCATTGTCACCGGTGATGTCGCCGGCGGGGACATCACCGCAGTCGCAGAAG CACCGGTGACGGGACGGTGGAGATCTTTCCGCGAGTTCCTCGAGGAACAGCTTGACGATCACTGTCCTCCGCCGCAGGATCAGACTTTCCTCACCGGAAA GGCTGCTAATTTGGCTTCTACCGAAGCCGCCGGGAGGACTTCTACGAGCAGCAACAGTACTGATCACAGTAAGAGTGACAGTAAGAATTGGAGTGAGAGC GAATTTACTGCGGACAGCGGTACTTCGGAGGGGTCAAACGAAGGCGGTAAAAACGAATTACAGTCCTCGTCACTGGACGGAGTCAGCGGAGGAAGCGCAG CCGTGACAGCCGGCGATGAAGCGTCCACGACCACCACCAGCTGGCCCGCCACTGCGGAAACTGCTAAGGCATGGACAAATGATCAAGAGAAAGAGCAGTT CAGTCCGGTTTCTATACTTGACTGTCCCTTTCAGGATGAAGAGGAGGAGGAGGATGATGGAGTCGATTCCCCGTTACAACGAGGCCTCGTTCTCGACGAA GGGAGCAAAAAGAAGCTGGTCAAAAGGGCGAGAAGGTTCGAGTGCCTGGATCAACTTCAACCGATCAACTTGCAGAAGCGAATCACAGTGATCGAGGAAT CATCATCAATATCCTCAATATCATCTTCCTCCGATGAAGCATGCTCTACATCACACAACAGCAATGTAGGATCGAAGGATCCCCTCAAGCTACTTAGGAT TGTGAAAGAGAGAGCATCATCATCGAGCACTAGTGATCATTCATCAAGGTCGTGCTCGATTCCGAAAGGTGATCAACTATTGTTCCTCGACTTCTTCGAA GAGAAGCTACTAAAAGGGCACGTAGAAGAAGATGATGATGAGGATAAGTTGTTGGAGGCAGTGGAAGAATGGATGAATGGGGAGGCAAAGGAGATGATGG TGGGTTGGGAAGTGAATGAGAGCAGAAATTTGTACCTTAAGGACATAGAGGAGAATGGAGGGTGGAGGAACTATGTCATTGATGTGGAGCAAGAGTTAGG GTTAGACATTGAGGATGAGATCTTCACTTCTTTGGTGAATGAGCTAGTGTTTTGGGAGTTTTGTTGA
AA sequence Show only first row Show all	>Lus10006336 pacid=23178368 polypeptide=Lus10006336 locus=Lus10006336.g ID=Lus10006336.BGIv1.0 annot-version=v1.0 MANSSLTRRPLVKETTGGPLMLRDFLIEDFSSCSSNGFKSFPRRRQCCPSTPRLMLPPVDRKSKLKLKSKPARHSKSSSKLFRKASKAVIRAVKSLPLRS SAAAAGGGAGWRRFATVIVTGDVAGGDITAVAEAPVTGRWRSFREFLEEQLDDHCPPPQDQTFLTGKAANLASTEAAGRTSTSSNSTDHSKSDSKNWSES EFTADSGTSEGSNEGGKNELQSSSLDGVSGGSAAVTAGDEASTTTTSWPATAETAKAWTNDQEKEQFSPVSILDCPFQDEEEEEDDGVDSPLQRGLVLDE GSKKKLVKRARRFECLDQLQPINLQKRITVIEESSSISSISSSSDEACSTSHNSNVGSKDPLKLLRIVKERASSSSTSDHSSRSCSIPKGDQLLFLDFFE EKLLKGHVEEDDDEDKLLEAVEEWMNGEAKEMMVGWEVNESRNLYLKDIEENGGWRNYVIDVEQELGLDIEDEIFTSLVNELVFWEFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23020			unknown protein		Lus10006336 [exp]	0	1
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10029767 [exp]	1.4	0.8732
AT5G50090			unknown protein		Lus10042139 [exp]	5.7	0.7776
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10034742 [exp]	6.0	0.8159
AT1G51405			myosin-related (.1)		Lus10003186 [exp]	8.0	0.8219
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	10.4	0.7993
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	11.5	0.7964
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10043080 [exp]	17.5	0.8068
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10015790 [exp]	18.0	0.8046
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	22.8	0.7437
AT3G14760			unknown protein		Lus10042496 [exp]	23.6	0.7327

Compare expression of checked genes

Lus10006336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.