Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12600 521 / 0 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT4G23010 514 / 0 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3) AT2G02810 69 / 4e-13 ATUTR1, UTR1 UDP-galactose transporter 1 (.1) AT1G14360 69 / 9e-13 ATUTR3, UTR3 UDP-galactose transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029605 [exp] 668 / 0 AT1G12600 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10009315 [exp] 537 / 0 AT1G12600 557 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10015850 [exp] 459 / 2e-163 AT1G12600 484 / 1e-173 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10030495 [exp] 71 / 2e-13 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1) Lus10005881 [exp] 65 / 2e-11 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10012848 [exp] 47 / 1e-05 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111000 [exp] 559 / 0 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.003G121000 [exp] 548 / 0 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.014G077500 [exp] 527 / 0 AT1G12600 566 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.006G110500 [exp] 59 / 2e-09 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1) Potri.016G139100 [exp] 58 / 3e-09 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1) Potri.008G209501 [exp] 49 / 7e-08 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10006337 pacid=23178359 polypeptide=Lus10006337 locus=Lus10006337.g ID=Lus10006337.BGIv1.0 annot-version=v1.0 ATGAAGGGCGAGGTTCAATCCAGGTCTCTGTTTGGGATTTCCCTCTCTGATCGACCCAAATGGCAGCAGTTCCTTATTTGCTCTTCTGGGTTCTTCTTCG GCTATCTTGTTAATGGCGTTTGTGAGGAATATGTGTACAATCGGCTCAAGTTCAGCTATGGATGGTACTTCACGTTTGTGCAAGGGTTTGTGTACTTGGG ACTGATTTACTTGCAGGGTTTCACCACCAAGCAAATGGTGAACCCATGGAAGACCTATGTCAAGCTCTCTGCTGTTCTTATGGGTTCTCATGGACTCACA AAGGGCTCCTTGGCTTTCCTTAACTATCCTGCTCAGATCATGTTCAAATCCACCAAGGTTCTTCCGGTTATGGTGATGGGTGCATTCATTCCCGGGTTGC GAAGGAAATATCCGCTTCACGAATACGTCTCTGCCCTGCTTCTAGTCATTGGACTGATCCTTTTCACCTTGGCTGATGCCAAGACTTCTCCGGATTTCAG TGTCATCGGTGTTGTGATGATTTGTGGCGCTTTGGTTTTGGATTCTCTCATGGGCAATCTGCAAGAAGCTATCTTTACCATGAACCCAGACACAACTCAG ATTGAGGTGTTGTTCTGCTCAACCGTAGTTGGATTGCCGTTCTTGCTCCCACCAATGATCCTGACAGGAGAGCTATTCACTGCCTGGAATTCCTGTGCTG AACATCCATATGTGTACGGTGTGTTGGTCTTCGAGGCACTGGCTACATTTATCGGGCAAGTCTCTGTTTTGTCGCTCGTTGCAATTTTCGGAGCTGCCTC TACTGCCATGATAACGACGGCTAGAAAGGCAGTGACTTTGTTGCTGTCATACCTGATATTTACAAAGCCTTTGACCGAGCAGCACGGATCCGGTCTGCTA CTAATCACAATGGGAATCATGCTTAAGATGATGCCGGATCCAAAAGTTCCTCAAAGGATTAAACCCAAGCAGTTGGAGTACCAGGAGAAAGCCGGTACCA GTAGCACGAAATCCGAAGAAGAAGATGAAGAGAACAGACCCCTAGTTTGA
AA sequence Show only first row Show all	>Lus10006337 pacid=23178359 polypeptide=Lus10006337 locus=Lus10006337.g ID=Lus10006337.BGIv1.0 annot-version=v1.0 MKGEVQSRSLFGISLSDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLKFSYGWYFTFVQGFVYLGLIYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLT KGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPLHEYVSALLLVIGLILFTLADAKTSPDFSVIGVVMICGALVLDSLMGNLQEAIFTMNPDTTQ IEVLFCSTVVGLPFLLPPMILTGELFTAWNSCAEHPYVYGVLVFEALATFIGQVSVLSLVAIFGAASTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLL LITMGIMLKMMPDPKVPQRIKPKQLEYQEKAGTSSTKSEEEDEENRPLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10006337 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	3.2	0.8932
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002907 [exp]	5.3	0.8972
AT2G44260			Plant protein of unknown funct...		Lus10017582 [exp]	5.3	0.8589
AT5G10530			Concanavalin A-like lectin pro...		Lus10033778 [exp]	6.9	0.8368
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10004629 [exp]	8.1	0.8491
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	9.9	0.8591
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	10.7	0.8544
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	12.8	0.8240
AT3G52420		ATOEP7	outer envelope membrane protei...		Lus10003733 [exp]	16.7	0.8329
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040924 [exp]	19.0	0.8183

Compare expression of checked genes

Lus10006337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.