Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11790 129 / 2e-32 Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029606 [exp] 624 / 0 AT4G11790 329 / 2e-108 Pleckstrin homology (PH) domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G120900 [exp] 322 / 5e-105 AT4G11790 238 / 3e-73 Pleckstrin homology (PH) domain superfamily protein (.1) Potri.001G111100 [exp] 310 / 2e-100 AT4G11790 246 / 9e-77 Pleckstrin homology (PH) domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006338 pacid=23178350 polypeptide=Lus10006338 locus=Lus10006338.g ID=Lus10006338.BGIv1.0 annot-version=v1.0 ATGAGAGGAACGAAACGTCTCGCCGCATCCTCATCGGAGTCGGGGCTGTCGCGTGATGCAATTGACACCACTATAAACACTAAAAGGGTAATGGGTTCCT ATTCTGATGTTCATAAGGCACAAACATCGCAATCCTTTGATGTGAAACGGGCTGAGTCGTCTAGACAGCATGTGAGAGCTCTCAATTCCCAATTTGCAAG CTGGGTGCAAAAACAACTCAAGGACCATCCTGATGAACTTTGGGAAGATGGAGTCCGTGACTATCTTGCTCATGCGTCCAACATCATGGAGAAGTTTAGT GATGTAGTGAACTGGCTGAAAGTGAATGCAGCCAAGGATGTTCCTGCTGCTGAATCTTCTGCCAGCGAAAAAAAAAATTCACCTGAAACGGGGAAGATTG AGAAGGATGTATCTAATGAGTCTGCTTTTGCATCCACTAGTTCGAGTTTTGCAGCTCCCTGGCCCTCTTTAATCTTCTCCAACAATCAAAGTTCTGGAGC CGTATTTAGCAGTCAAAAGTTTGGCCTACTTCAGTCGAATAGCCAAAGCTCTGGCATATTCTCTAGTAGCCAAAGTACTGGCTTACTAGCAGATAGTCAA AGTACTGGCTTACTAGCAAGCAGTCAGACTTCTGGATTATTTTCAAATAGTCCGAAGTTTGGATCAATAACTAATAATCAAAATGCTGGGCTATTCTCCC AGAGTCAAACCCAAAGCCCCGGGTCACTATCAAATAGTCCAGGTGTGAGTTTACTCTCCAACAGCCAAACCCAGTCCCCTGAAATACTGTCTAATAATCA AGGATCTGGGATATCCTCAAATAATCAAGGTGCTGGCTTGTTCACAAATGCTAAGGGCCCTGCATTGTTTTCAAATAGTCAAACTACTGTTTCATTCTCC AGCAGTCCAAGCAGTGGGATGTTTTCAATGAATCCAAGCTCGTCGGGAGGGTTATTCAGCAGTCAAGCTCCTTTCTCGTTTGGGGGTCAAAGTTCTGCTC CCATAAACAACAATGCTTCAGATGATGCAGATGATGGAGATGAATTGCCTCGGCCTAGTAGTCCGTCTGTGAAAAAGGCTGAAGAGAAGGGGGTGGTTGT TGTCCATGAAGTGAAGTGCAAACTCTATGTCAAGTCAATTGATCCAGCAGATAAAGGCGCATGGAAAGACAAAGGACCTGGTCAGCTTAACATAAAATGT TCTGAAGGGGTCAGCAAGGGCACAAAAGAATCGAATCCAATAATTATTGTCCGTAACGATGTACGTGAACTTCTACGCCCCAGTGGCAAATACCAAACTG TAGGAAAGGTGTTGTTAAATGCTTTGCTTTATCCGGGAATCAAGACGAGTCTGCAGAAGAATGCAGTCGTTGCCGTATTTCATGTAGCGGCCGATGATTC TGGCAGCAGTGAGAGCGTAGTGGCCCGAACTTTCTTAATCAGAATGAAAACAGAGGAAGATCGGAACAAGCTATCAACAGCAATCAGTGAATACGCACCC GAATCATGA
AA sequence Show only first row Show all	>Lus10006338 pacid=23178350 polypeptide=Lus10006338 locus=Lus10006338.g ID=Lus10006338.BGIv1.0 annot-version=v1.0 MRGTKRLAASSSESGLSRDAIDTTINTKRVMGSYSDVHKAQTSQSFDVKRAESSRQHVRALNSQFASWVQKQLKDHPDELWEDGVRDYLAHASNIMEKFS DVVNWLKVNAAKDVPAAESSASEKKNSPETGKIEKDVSNESAFASTSSSFAAPWPSLIFSNNQSSGAVFSSQKFGLLQSNSQSSGIFSSSQSTGLLADSQ STGLLASSQTSGLFSNSPKFGSITNNQNAGLFSQSQTQSPGSLSNSPGVSLLSNSQTQSPEILSNNQGSGISSNNQGAGLFTNAKGPALFSNSQTTVSFS SSPSSGMFSMNPSSSGGLFSSQAPFSFGGQSSAPINNNASDDADDGDELPRPSSPSVKKAEEKGVVVVHEVKCKLYVKSIDPADKGAWKDKGPGQLNIKC SEGVSKGTKESNPIIIVRNDVRELLRPSGKYQTVGKVLLNALLYPGIKTSLQKNAVVAVFHVAADDSGSSESVVARTFLIRMKTEEDRNKLSTAISEYAP ES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11790			Pleckstrin homology (PH) domai...		Lus10006338 [exp]	0	1
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	2.6	0.8908
AT4G24820			26S proteasome, regulatory sub...		Lus10017932 [exp]	2.8	0.8658
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	8.0	0.8796
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	8.3	0.8683
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10037610 [exp]	10.1	0.8126
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Lus10024130 [exp]	16.1	0.8461
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	16.5	0.8541
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10001024 [exp]	17.6	0.7947
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10021905 [exp]	18.5	0.8060
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10008421 [exp]	20.0	0.8571

Compare expression of checked genes

Lus10006338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.