Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63020 1322 / 0 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT2G40030 295 / 6e-81 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT4G35800 201 / 1e-51 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1) AT5G60040 176 / 3e-44 NRPC1 nuclear RNA polymerase C1 (.1.2) AT3G57660 109 / 1e-23 NRPA1 nuclear RNA polymerase A1 (.1) AT1G45230 56 / 3e-08 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) AT3G46630 54 / 2e-07 Protein of unknown function (DUF3223) (.1) AT5G62440 49 / 5e-06 Protein of unknown function (DUF3223) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002955 [exp] 2872 / 0 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002748 [exp] 316 / 1e-87 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10041856 [exp] 191 / 1e-48 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10016332 [exp] 181 / 2e-45 AT2G40030 1086 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10015971 [exp] 157 / 2e-38 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10013536 [exp] 133 / 5e-31 AT5G60040 1506 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10028403 [exp] 120 / 4e-27 AT4G35800 1076 / 0.0 RNA polymerase II large subunit (.1) Lus10040493 [exp] 102 / 2e-21 AT3G57660 1802 / 0.0 nuclear RNA polymerase A1 (.1) Lus10011299 [exp] 100 / 6e-21 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111300 [exp] 1691 / 0 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.001G027232 [exp] 300 / 2e-82 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.003G196900 [exp] 288 / 1e-78 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.005G107600 [exp] 197 / 2e-50 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1) Potri.001G341900 [exp] 182 / 3e-46 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2) Potri.006G055300 [exp] 106 / 8e-23 AT3G57660 1890 / 0.0 nuclear RNA polymerase A1 (.1) Potri.014G023400 [exp] 60 / 1e-09 AT3G46630 218 / 1e-72 Protein of unknown function (DUF3223) (.1) Potri.014G028300 [exp] 54 / 1e-07 AT1G45230 221 / 2e-73 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G023200 [exp] 51 / 1e-06 AT3G46630 194 / 6e-63 Protein of unknown function (DUF3223) (.1) Potri.002G125700 [exp] 50 / 2e-06 AT1G45230 210 / 6e-69 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04998 [flax] [poplar] RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223) PF05000 [flax] [poplar] RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4 PF04983 [flax] [poplar] RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04997 [flax] [poplar] RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF00623 [flax] [poplar] RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2
Representative CDS sequence Show only first row Show all	>Lus10006339 pacid=23178343 polypeptide=Lus10006339 locus=Lus10006339.g ID=Lus10006339.BGIv1.0 annot-version=v1.0 ATGGAGGTTGATACGTTCGCGGTCCAACGACCACCGCCATCAGGTTTCTTAACTGGCATAACCTTCGGTATCGCAACCAAAGACGAAAAGGAAAAGTTTG CAGCTTTAGAGATTACAACAAATAGTGAAGTCACTGACACAAAGTTAGGATTCCCAAACACTAGTTCTCAATGTTCCACTTGTGGTGCTAAAGATTTGAA AAATTGTGAAGGTCACTTTGGCGTCATCAAGTTTCCTATGACAATTCTCAATCCCCATTTCATGTCTGAAGTCGCCCGCATTCTGAACAATATATGCCCG AGTTGTAAATCTGTGCGGAATCTTTTGCCTAAGAAAAAGGATCAGAGGCCTAAAGAAAACCTGCCTAATGGCTGCAAATACTGTGCGAAGCAAGGAAAGA CATTAGGGTGGTATCCAAGAATGAAGTTCACGGTTTTTACTGGACAATACTTTCGGAAAACGACAATCGTTGCCGGGATTGGCAAACAACTACCGACACG GAGAGGAGTCAGAAAACTGGCTCCTGACTTTTGGGACATTATTCCGAAGGATGAAGAATTAGATGAAAACGCTATCACGCCAACTAAAAGGCTTTTGACG CATGGACAGATTTGCCATTTGTTAAATGGTGTTGATGATAGTTTCATAAAGAGGTTCTGTTTGAACAAAGAGTGTCTCTTCCTCAATAGCTTCTCAGTAA CACCAAATTCCCAGCGTGTTACGGAAATGATGAGTTCATATTCTAGTTCACGAAGATTGGCCTTTGATGGTCGCACTCGTGCATACAAGAAGATGGTTGA TTTCAGAGGGAAAACACATGAATTATGTTACCATGTCCTCGAGGCTCTCGCAGCTTCCAAGATAAACACTGAACGGATAGCCCCAAACGATCCAATTGCC CTTCTTCAAAAGAGGAATGATGATGTGTCTACAAACTCTTCAGGATTGAGATGGGTCAAGGATGTTGTTCTGGCTAAGAGGAATGATCATTGTTTCCGCA TGGTGGTCGTCGGAGACCCTAGTCTACAGCTCAGTGAAATTGGGATCCCCCGCGCAGTTGCAGAAAGTATGAAAATTTCGGAACATCTGACAACATACAA TGCAGACAAGCTCGTAAGTTGCGTTGAAGAGCTCCTTCTCGAGAAGGGTATGACTCATGTACGCAGAGGAAGCGACCTTGTTCGTATTTCTCGTACAAAG GATCTCAAAATCGGGGACATGATATATAGAAGACTGAAGGATGGAGATACCGTCCTAGTCAACAGGCCTCCGTCCATCCATAAACACTCCCTAATTGCAC TCTCTGTGAAGATCCTTCCGGTTACTTCATCTCTAGCGATAAATCCGCTCTGCTGCTCTCCGTTTCGGGGCGATTTCGACGGCGACTGCATGCATGGCTA TATTCCTCAGTGTGTTAACAGTAGAACCGAACTTAAGGAGCTCGTTGCGTTGGATAAGCAGCTGACAGATGTACAGAGTGGTCAGAATCTTATTGCTCTC AGCCAAGATAGTTTGACTGCTGCACATTTAGTATTAGAGAATGGGATCTTTCTCAACAAATATCAAATGCAACAGTTGCAGATGTTCTGCCCTAAGGAGT TGCTAGCCCCGGCGATGATGTCATCTTTGACCGGTGGGGTATGGACTGGAAAACAGTTGTTTAGCATGCTCTTGCCCCAAGGGTTTGACTTTGATTTTCC ATCAGACAATGTCTCGATACGTGATGGTGAGCTAATGCACTGTGATGGATCTTTCTGGTTGCGTCAGACAGAAGGAAACCTATTTCAAAGCCTTTCCCAG CATTTCAGCGGTGATGTTCTTGATGTGCTGTATGCTGCTCAGAGAGTTCTGGGCGAGTGGCTATCGATGAGAGGCTTTAGTGTTTCGCTCTCTGACTTCT ACCTCTGTCCCGACTCCAACTCACACAAAAGCATGTTGGATGAGATCTCGTATGGGTTGCAAGAAGCAGAAGAAGCTTGTGACGCAAGGCAGCTAATGGT GGATTCTCGTCAGGATTTTCTTGCTACAGGCAGTGAAGAAGATAGTGTTGTGTTCGAAGCTGATAGCTTGTTTCTTGAAAGGCAGAGATCTGCTGCACTG AGTCAAGGATCGGTTGATGCTTTCAAGCGAGTGTTCCGAGATATTCAAACCCTGGCCTTCAGATATGCGTCTAAGGAAAATTCATTGCTGACCATGTTTA AGGCCGGAAGCAAAGGAAATCTGCTGAAACTGGTCCAGCATAGCATGTCTCTCGGTCTGCAACATTCGCTTGTCCCATTGCCGTTCAAGATGCCTCGCCA GCTCTCGTGTGAATCCTGGGATAAACAGAAAGCCGATGATGCTACTGACTGTTCCAAGCGGTTTGTTCCATCTGCAATTGTCAGAAGCTGCTATCTAACC GGACTGAATCCCTTGGAAGCTTTCGCTCACTCAGTCACAAACAGAGATAGCTCGTTTAGTGACAACGCTGAGCTTCCGGGAACTTTGTCCCGGAGACTTA TGTTCTTCATGCGTGATATCTGCACGGCATACGATGGGACAGTAAGGAATGCATATGGGAATCAGCTTGTACAGTTTTCATACAACACTGATGAGAACAC AAGCGATCGCGGTCCAGATGGTGGCCACCCTATTGGTGCACTGGCTGCTTCTTCGATCTCGGAAGCTGCATATAGTGCTCTGGACCAGCCGATTAGTCTT CTGGAAAAATCGCCCCTGCTAAATCTCAAGAATGTACTGGAATGCGGTGCCAAAAAGAGTAAATCTCCACGAACTGCATCACTGTTTCTCTCAGAGAAGC TCGGAAGAAAAAGATACGGTTTTGAGTATGGCGCGCTGGACGTTCAGACCCATTTGCAGAAAGTTCTGCTTTCTGATACAGTTTCTATTGCCAGGATAAT ACATCCTCGGAAAGCTGATTGCAAGCCTCAACTGAGCCCTTGGGTTATACATTTCCATTTATTGAAGGAAATTGTGAAGAAGAAAGGCCTGCAGCCTGCA GTAATAGTTGACGCCCTGGACAAGCAGTGCTCGGTGAATCCCAAATTTCCGAAAATTGAGTTCAAATACATTCAGGGATGTCGTGATGGTGACAATTGGA ACGAACGCCAGGAAACATTTTGTATAACGGCCACAGTGATTGAAAGTCCAAAAAGATCTTCCACGGAATTGGAAACTATTCGAGATTTCTTGATTCCCTT TCTTCTTGGAACACCTGTTAGAGGATTCTCGGATATCGACAAGGTGGCTATTCTTTGGAGTGATAAGCCAAAGGTAACGACTTCTGGCAAACGGAAATCT GGTGAGCTCTACTTGCGAGTAACGATGTCCGGAATGTCAGACACATCGAGACTCTGGGGCCAGCTTCTGGACAATTGTCTCCCTATAATGGATATGATTG ACTGGACGCGAAGCCATCCGGATAACATCAGGGATTTATCTTCTGCTTATGGCATCGATTCTGCTTGGAATGTTTTTGTCAGTAGCCTGGAGTCTGCAAT TGGTGATGTCGGGAAAACTGTTCTTCCTCAGCATTTGCTTCTGGCAGCTGACACTATGTCCATAACTGGAGAATTTGTTGGCTTGAATGGAAAAGGTTTG AAGCTACAGAGGGAGCATGCGTCTGTTACATCCCCATTTGTGCAGGGCGCCTTTAGTAATCCCGGGGATAACTTTATCCGTGCTGCAAAGGCTGGTGTCA CTGATCAACTCATGGGTTCGGTGGATAAACTGGCATGGGGGAGGATGGCTGCCATTGGAACTGGCACGTTTGACATCATTATGACTCTGAATAATCATGA ACTGCCCAAACATAAAAATGGGTACGAGTTTCTGGCTAAACACTCAACTTCTCAAACTCCCAGCACAACGTTTGAGATGCCAGACTCGTGGAGCAAAAGA TTCGAGAAATGCCGAACAGAAATACCATTCAAACTTGATGGCTATGCTAACCTATCCAAAAAGGCAAGTGTTGCAGCATCGCTTGGAACTCATCTATCTT ATAACGACATTCTGAAGCTCGGCCAAGAACTGCGCAGGATCTTGAATAGGCAAGTCAACTCTCCTGTGGATGAGGAACTTAGTGATCGTGCCAAAGAGAA ATTGATGACAGCATTATACTTCCACCCTCGTAAAGATGAGAAGATTGGAAACGGAGCTCACCTCTTCAAGGTTATAAACCACCCGATACATGAAGGCTCG CGATGCTTCTCAGTGGTTAGAGTCGATGGTACAATGGAGGACTTCTCGTATCATAAGTGCATCATGGCTGCACTTGACATAATCGCCCCCAGAAAGACCT CCTTGTACCAGAATAGGTATCTGCAGAGGCTCAATGGTAAAGATCAGTAA
AA sequence Show only first row Show all	>Lus10006339 pacid=23178343 polypeptide=Lus10006339 locus=Lus10006339.g ID=Lus10006339.BGIv1.0 annot-version=v1.0 MEVDTFAVQRPPPSGFLTGITFGIATKDEKEKFAALEITTNSEVTDTKLGFPNTSSQCSTCGAKDLKNCEGHFGVIKFPMTILNPHFMSEVARILNNICP SCKSVRNLLPKKKDQRPKENLPNGCKYCAKQGKTLGWYPRMKFTVFTGQYFRKTTIVAGIGKQLPTRRGVRKLAPDFWDIIPKDEELDENAITPTKRLLT HGQICHLLNGVDDSFIKRFCLNKECLFLNSFSVTPNSQRVTEMMSSYSSSRRLAFDGRTRAYKKMVDFRGKTHELCYHVLEALAASKINTERIAPNDPIA LLQKRNDDVSTNSSGLRWVKDVVLAKRNDHCFRMVVVGDPSLQLSEIGIPRAVAESMKISEHLTTYNADKLVSCVEELLLEKGMTHVRRGSDLVRISRTK DLKIGDMIYRRLKDGDTVLVNRPPSIHKHSLIALSVKILPVTSSLAINPLCCSPFRGDFDGDCMHGYIPQCVNSRTELKELVALDKQLTDVQSGQNLIAL SQDSLTAAHLVLENGIFLNKYQMQQLQMFCPKELLAPAMMSSLTGGVWTGKQLFSMLLPQGFDFDFPSDNVSIRDGELMHCDGSFWLRQTEGNLFQSLSQ HFSGDVLDVLYAAQRVLGEWLSMRGFSVSLSDFYLCPDSNSHKSMLDEISYGLQEAEEACDARQLMVDSRQDFLATGSEEDSVVFEADSLFLERQRSAAL SQGSVDAFKRVFRDIQTLAFRYASKENSLLTMFKAGSKGNLLKLVQHSMSLGLQHSLVPLPFKMPRQLSCESWDKQKADDATDCSKRFVPSAIVRSCYLT GLNPLEAFAHSVTNRDSSFSDNAELPGTLSRRLMFFMRDICTAYDGTVRNAYGNQLVQFSYNTDENTSDRGPDGGHPIGALAASSISEAAYSALDQPISL LEKSPLLNLKNVLECGAKKSKSPRTASLFLSEKLGRKRYGFEYGALDVQTHLQKVLLSDTVSIARIIHPRKADCKPQLSPWVIHFHLLKEIVKKKGLQPA VIVDALDKQCSVNPKFPKIEFKYIQGCRDGDNWNERQETFCITATVIESPKRSSTELETIRDFLIPFLLGTPVRGFSDIDKVAILWSDKPKVTTSGKRKS GELYLRVTMSGMSDTSRLWGQLLDNCLPIMDMIDWTRSHPDNIRDLSSAYGIDSAWNVFVSSLESAIGDVGKTVLPQHLLLAADTMSITGEFVGLNGKGL KLQREHASVTSPFVQGAFSNPGDNFIRAAKAGVTDQLMGSVDKLAWGRMAAIGTGTFDIIMTLNNHELPKHKNGYEFLAKHSTSQTPSTTFEMPDSWSKR FEKCRTEIPFKLDGYANLSKKASVAASLGTHLSYNDILKLGQELRRILNRQVNSPVDEELSDRAKEKLMTALYFHPRKDEKIGNGAHLFKVINHPIHEGS RCFSVVRVDGTMEDFSYHKCIMAALDIIAPRKTSLYQNRYLQRLNGKDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10006339 [exp]	0	1
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022879 [exp]	5.2	0.8692
AT4G23950			Galactose-binding protein (.1....		Lus10032405 [exp]	8.1	0.8382
AT2G34190			Xanthine/uracil permease famil...		Lus10007289 [exp]	9.2	0.8504
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001371 [exp]	10.3	0.8663
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10030363 [exp]	10.8	0.7770
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	11.5	0.8622
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10030444 [exp]	14.4	0.8647
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	19.5	0.8519
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10042540 [exp]	23.5	0.7706
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	30.1	0.8495

Compare expression of checked genes

Lus10006339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.