Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22990 1087 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT4G11810 1085 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT1G63010 1020 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein AT5G20150 54 / 2e-07 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT2G45130 47 / 3e-05 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT5G15330 46 / 7e-05 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002956 [exp] 907 / 0 AT4G22990 797 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10009314 [exp] 865 / 0 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015852 [exp] 851 / 0 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10030095 [exp] 51 / 1e-06 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10043272 [exp] 50 / 2e-06 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 50 / 5e-06 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002908 [exp] 48 / 1e-05 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10002018 [exp] 48 / 2e-05 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G120600 [exp] 1155 / 0 AT4G22990 1112 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.001G111400 [exp] 1145 / 0 AT4G22990 1087 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.014G078000 [exp] 985 / 0 AT4G22990 978 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.002G143900 [exp] 56 / 2e-08 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G061400 [exp] 52 / 7e-07 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.018G131500 [exp] 46 / 6e-05 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 44 / 0.0002 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.006G253400 [exp] 44 / 0.0003 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] PF03105 [flax] [poplar] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Lus10006340 pacid=23178371 polypeptide=Lus10006340 locus=Lus10006340.g ID=Lus10006340.BGIv1.0 annot-version=v1.0 ATGGTTGCGTTTGGGAAAAAGCTGAAAGAAAGGCGAATTCAAGAATGGCAAAGATATTATATCAACTACAAGCTGATGAAGAAGAGGGTAAAAGAATACG GCCACCAAATTGAAGTTGGAGCTCTAGATCGGCGCCATGTTCTTAAGGACTTCTCAAGAATGCTTGATTGTCAGATTGAAAAGATTGTCCTGTTTCTGTT GGAGCAACAAGGGGTGCTTTCTGGCAGAATATCAAAGCTTAATGAGGAACAAGATGCTCTGCAACAGGAGCCTGATATATCTAAGCTATCGAAATTGCGG GAAGATTATAGGGATGTTGGGAGAGATCTTCTTAAGCTGCTTTTCTTCATTGAGATAAATGCCGTGGGGCTACGTAAAATCCTGAAGAAGTTTGATAAGC GTTTTGGATATCGTTTCACTGATTACTATGTGAAGACACGGGCCAATCATCCTTATTCCCAGCTGCAACAAGTGTTCAAGCATGTGGGTCTTGGGGCAGT CGTTGGAGCCATATCTCGCAATCTTCATGAACTTCAGGAACATCAAGGAAGTTTCTTGTCCATTTATGATCAACCTGTGCTTCCTCTTCAGGATCCTGTT GTTGATTCCATGAAAGCAGCTGTCGACCGGTTAAGCCACTCAACGAACTTCTTGAACTTTATGGCCCAACATGCACTTATCATGCAAGAAGAGCTCCCAA CCCCCACGGAGGAAAACATTGATGATAATAGATACCATTTTATGTCTCTTCTCTTGAATTTAGTCAACACCTTCCTTTACATGGTGAACACCTATATTAT AGTACCCACAGCAGATGACTACTCCATGAGCCTCGGAGCACCAGCAACAGTTTGTGGTGTTGTCATTGGATCAATGGCTGGGGGGCGAGGTGTTTTTTAT GATTTCTTTTTTTCTTCAGTTTACTTCAGTGCATGGTCTAATAGATCATACTTCAAGCCTCTTGTGTTCAGCAGTATTGTTCTCCTCATCGGGAATGTCA TGTATGCAATGGCTTATGATTCCGAGTCAATAACCATACTTTTATTAGGCCGTCTATTCTGTGGGTTTGGTTCTGCTCGAGCTGTCAACCGACGCTATAT CAGTGATTGCGTGCCTCTTAAGTTCCGCATGCAAGCTTCCGCAGCTTTTGTTAGTGCCAGTGCTCTTGGGATGGCTTGTGGCCCTGCTCTTGCTGGCTTT CTTCAAACTGAATTTAAAATTTACAATATCACATTCAACCAGAACACTCTGCCTGGCTGGGTTATGGCTGTGGGTTGGTTCATTTATCTGATATGGTTGT CATTCTCGTTTAGAGAACCTGCTCAAGAAGCAGAAGAGACCAATGTATCATCACAATCTAGTGAAGTACCAGCACGAAACGATGCTCTTGAGAAAGGCCT TAAACAGCGATTGCTCCCCGGTACAGAAGCCAGTCAAGAAGATGAAGATTATGGGAGTGATGAAGAAGCTGAGGAATCTAGACGACCAGCTAATTCATTT CGTTCGGCTTATAGGCTACTCACACCTTCTGTAAAGGTTCAACTGTTAATATATTTCATGCTCAAGTATGCCATGGAGATTCTGCTATCGGAGTCCAGTG TTGTCACCACATACTACTTCGGCTGGTCTACTAGCTCAGTTGCCATATTTCTTGCATGTTTAGGCATCACCGTCCTACCCGTGAACATCCTCGTTGGAAG CTATATAAGCAACATGTTCGAGGATAGGCAAATCCTATTAGCATCAGAAATCATGGTTTGTGTAGGCATACTCCTAAGCTTCCACTTATTAGTTCCATAC ACTGTGCCGCAATACGTCTGCTCAGGACTCATCATGTTCGTCTCTGCCGAAGTACTCGAAGGCGTCAACTTATCGCTGCTCTCGCGAGTGATGTCATCAA GGCTCTCGAAAGGGACGTACAACGGGGGGCTGCTCTCGACGGAGGCAGGCACATTAGCTCGTGTCGTGGCAGATGGCACGATTACATTGGCAGGGTACTT GGGGCAGAGCATGCTGTTGAATGTAACGCTTCTCCCTTCTCTTGTCATTTGCATAACCTCCATCCTCGCCACCTGCTTCACCTACAACTCGCTCTATTGA
AA sequence Show only first row Show all	>Lus10006340 pacid=23178371 polypeptide=Lus10006340 locus=Lus10006340.g ID=Lus10006340.BGIv1.0 annot-version=v1.0 MVAFGKKLKERRIQEWQRYYINYKLMKKRVKEYGHQIEVGALDRRHVLKDFSRMLDCQIEKIVLFLLEQQGVLSGRISKLNEEQDALQQEPDISKLSKLR EDYRDVGRDLLKLLFFIEINAVGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQEHQGSFLSIYDQPVLPLQDPV VDSMKAAVDRLSHSTNFLNFMAQHALIMQEELPTPTEENIDDNRYHFMSLLLNLVNTFLYMVNTYIIVPTADDYSMSLGAPATVCGVVIGSMAGGRGVFY DFFFSSVYFSAWSNRSYFKPLVFSSIVLLIGNVMYAMAYDSESITILLLGRLFCGFGSARAVNRRYISDCVPLKFRMQASAAFVSASALGMACGPALAGF LQTEFKIYNITFNQNTLPGWVMAVGWFIYLIWLSFSFREPAQEAEETNVSSQSSEVPARNDALEKGLKQRLLPGTEASQEDEDYGSDEEAEESRRPANSF RSAYRLLTPSVKVQLLIYFMLKYAMEILLSESSVVTTYYFGWSTSSVAIFLACLGITVLPVNILVGSYISNMFEDRQILLASEIMVCVGILLSFHLLVPY TVPQYVCSGLIMFVSAEVLEGVNLSLLSRVMSSRLSKGTYNGGLLSTEAGTLARVVADGTITLAGYLGQSMLLNVTLLPSLVICITSILATCFTYNSLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22990			Major Facilitator Superfamily ...		Lus10006340 [exp]	0	1
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10005057 [exp]	2.2	0.8768
AT2G32450			Calcium-binding tetratricopept...		Lus10010627 [exp]	8.1	0.8144
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10018427 [exp]	9.5	0.7759
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	12.6	0.8278
AT3G12110		ACT11	actin-11 (.1)		Lus10004169 [exp]	14.0	0.8060
AT5G52882			P-loop containing nucleoside t...		Lus10027551 [exp]	14.4	0.7601
AT5G55960			unknown protein		Lus10022565 [exp]	16.2	0.7731
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10027827 [exp]	20.8	0.7941
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10011806 [exp]	21.5	0.7641
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10009134 [exp]	24.2	0.7703

Compare expression of checked genes

Lus10006340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.