Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008536 [exp] 530 / 0 ND / Lus10038309 [exp] 339 / 1e-110 ND / Lus10022836 [exp] 318 / 2e-104 ND / Lus10005392 [exp] 310 / 1e-99 ND / Lus10024122 [exp] 306 / 3e-98 ND / Lus10029057 [exp] 285 / 6e-90 ND / Lus10005393 [exp] 278 / 2e-88 ND / Lus10024121 [exp] 274 / 2e-85 ND / Lus10023559 [exp] 271 / 6e-85 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047300 [exp] 413 / 6e-140 ND / Potri.001G388100 [exp] 385 / 9e-130 ND / Potri.001G388200 [exp] 386 / 2e-129 ND / Potri.001G387900 [exp] 386 / 2e-129 ND / Potri.001G388801 [exp] 384 / 1e-128 ND / Potri.001G388600 [exp] 382 / 7e-128 ND / Potri.001G388450 [exp] 382 / 9e-128 ND / Potri.011G108300 [exp] 378 / 1e-126 ND / Potri.001G388900 [exp] 368 / 1e-122 ND / Potri.011G108200 [exp] 346 / 6e-114 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase CL0205 [flax] [poplar] PF12142 [flax] [poplar] PPO1_DWL Polyphenol oxidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10006341 pacid=23178386 polypeptide=Lus10006341 locus=Lus10006341.g ID=Lus10006341.BGIv1.0 annot-version=v1.0 ATGGCAATGTCAACCATAGTGGCAATTGCTCTACTTCTCTTCTACACAAGCACCATTTCAGTACACTCCAGCCCTATAGTCACCGGAAAATGTGGCAATT CAACACTCCCTCCCAAGGTTCGTCCGATGAACTGTTGCCCGCCACTCCCGTCGGCACAAATTTACGACTTCATCCCTCCTTCCGAAGGCTCGCCACGGCG TATCAGGCTAGCCGCACAGTCCGTGGACCGTTTATATGTTGCGAAATACAGACGCGCGGTAGAGCTGATGAAAGCGCTCCCCTCAAAAGATCCGCGGTCC TTCTTTCAACAAGCTCGTCTCCACTGCGCGTATTGTAACGACGCATACAAACAAAGTGGATTTCCCGACCTTCCGGTCCAAGTTCACTACTCGTGGTTGT TTCACCCGTGGCATAGATGCTATATCTACTTCTACGAGAGGATTCTGGGGAAGTTGATCGGGGACCCAACTTTCGCACTTCCGTTCTGGAATTGGGATGC CCCGGGCGGGATGCAGATGCCGTCCATGTATACAGAGGATCCGACTTCCCCTCTGTACGACCCGAGAAGGAATCCCTACCACCAACCACCAACATTAATC ACCTTGGACTTGAAGTTTCAGGACTCCGAGAACACCACAGACCAAGAGCGTATCGCAAGCAACGTCGGCTTCATGCACGAAAAGATGGTGTCCACCTTGG GGAACACCTCACTGTTTCTCGGGATGCCATATCGAGCTGGGGATAAACCTAACCCAAAGGCATCGGGTGGTTCGATAGAGATATTTCCGCACAATCGGGT CCATGAATGGACCGGGAACAATAGGTCAACGAATATGGAAGACATGGGATCGTTCTACTCGTCAGCCAGGGATCCGATATTCTCCGCCCACCATGCGAAC GTTGACCGGTTGTGGAGTTTGTGGAAGTCGCTAGGAGGGACCGATTACGAAAGTGATGATTGGTTGGACTCTACATTCCTATTCCATGACGAGAACGCTC GTCTAGTGAGGGTCAAGGTACGGGATTGCGTCGACCACAAGAAGTTGGGTTACGAGTATCAATTCCTCTCCGAAGGCCATGTCGTCCAAGTTCCTCGCCT TTTATCTGACAGGTCGCCGGAGGAACAACTTGCTGGTTGTCTGATTAGAAGTTCATCCAAGTTGCAGGAGCTCACCATTGTGTTTGATAATTATAGCAAC CGTAACTATTATGGGTGCGGTCCGAAGCCAATTCTTACCCAGGAGAAGCTGTTTGAACCAGAGGATTGCCTTAAACAAGTTTGTCATTTCGAGAGACTTG AAGATTTCAACATCCATAACAGTCGTGGAATTCACTTGTAG
AA sequence Show only first row Show all	>Lus10006341 pacid=23178386 polypeptide=Lus10006341 locus=Lus10006341.g ID=Lus10006341.BGIv1.0 annot-version=v1.0 MAMSTIVAIALLLFYTSTISVHSSPIVTGKCGNSTLPPKVRPMNCCPPLPSAQIYDFIPPSEGSPRRIRLAAQSVDRLYVAKYRRAVELMKALPSKDPRS FFQQARLHCAYCNDAYKQSGFPDLPVQVHYSWLFHPWHRCYIYFYERILGKLIGDPTFALPFWNWDAPGGMQMPSMYTEDPTSPLYDPRRNPYHQPPTLI TLDLKFQDSENTTDQERIASNVGFMHEKMVSTLGNTSLFLGMPYRAGDKPNPKASGGSIEIFPHNRVHEWTGNNRSTNMEDMGSFYSSARDPIFSAHHAN VDRLWSLWKSLGGTDYESDDWLDSTFLFHDENARLVRVKVRDCVDHKKLGYEYQFLSEGHVVQVPRLLSDRSPEEQLAGCLIRSSSKLQELTIVFDNYSN RNYYGCGPKPILTQEKLFEPEDCLKQVCHFERLEDFNIHNSRGIHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006341 [exp]	0	1

Compare expression of checked genes

Lus10006341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.