Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51920 424 / 3e-141 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 380 / 3e-124 unknown protein AT5G66950 258 / 6e-75 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 253 / 3e-73 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 253 / 6e-73 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G16540 81 / 2e-15 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) AT1G13570 72 / 4e-13 F-box/RNI-like superfamily protein (.1) AT2G39415 53 / 2e-08 F-box family protein (.1) AT1G66290 54 / 2e-07 F-box/RNI-like superfamily protein (.1) AT3G49150 54 / 3e-07 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002958 [exp] 880 / 0 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 404 / 4e-133 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 277 / 3e-84 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 265 / 1e-77 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 266 / 2e-77 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016776 [exp] 257 / 2e-74 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 257 / 3e-74 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10040760 [exp] 138 / 7e-35 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10002959 [exp] 132 / 3e-34 AT1G13570 112 / 4e-28 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111600 [exp] 362 / 5e-116 AT4G22980 431 / 2e-144 unknown protein Potri.015G137900 [exp] 347 / 3e-110 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G120500 [exp] 336 / 3e-106 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 267 / 7e-78 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G036100 [exp] 264 / 1e-76 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G172100 [exp] 103 / 8e-24 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G097000 [exp] 100 / 9e-23 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 99 / 3e-22 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G132400 [exp] 84 / 5e-17 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 82 / 2e-16 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10006342 pacid=23178379 polypeptide=Lus10006342 locus=Lus10006342.g ID=Lus10006342.BGIv1.0 annot-version=v1.0 ATGGGGAAAACAGGGGACTCTGTTGCAACCTGCCATTGTGGGATATGTCGAATCCCTTGCCGTCGATCGGCGAACCTCGTAACCAGCAGCGATCCTTCTC CGGCAGCAGCTGCATTCCGAACTGAGTTCGAAGCTTCGATGGCGAACGTGCATTTCACCAACCATGAGTCGCTGCCTTCTCTGGACGAATCGTTCACGAA ATTCACTGAATCGTTCCCGAAGTACCTCGAGACGAAGGAGGCGGACAGAATTAGAGCAGAGGAATATTCCCATCTCTCTGTTTCGAATCACGTCTGTCTG GATTACATCGGCAACGGTCTATTTTCCAATCGCCGGGAGAAGACATTTCCGCCGTCAGTAGCGTCAACGTCGACTGCGGAGTCAACGGAGTCGTCGGAGA ATCCGTTCTTCGAACTCTCCCACAAATCAGTGATCAGCTTGAAATCGGAAATACAAAACGGGATTCCGGAATCGGAATTCGGAACCAGATTGAAGAACAG AGTACTGTCGTTTATGAACATTTCCGACGAGGAATACGGCGTCGTTTACACTGCAAACGAATCCTCTGCTTTCAAGCTCCTCGCCGATTGCTACCCGTTC GAAACGAACCGGAATCTATTAACGGTCTACGACCACGAAAACGAAGCAGTGGAATCAATGGAGAAATCTGCTCAAAAGAAAGGAGCCAGAGTCTCGTCGG CGGAGTTCACCCTGCCAGAGCTAGGAGTCCAGACGGAGAAGCTACAGAGAAAGATAACTCGTAATAAGAAGAGGAGGAGCAAAAGGAGTGGCCTTTTCGT TTTCCCGGCGCAATCGAGAGTCACCGGAGCTAGATACTCGTACCTATGGATGAATTCAGCTCGAGAAAACGGCTGGCACGTCCTGCTCGACGCATCGGGG TTAGTTCCGAAAGAAATGGAGACTCTGGGTTTGTCCCTGTTCGAGCCGGATTTCATAATCTGCTCCTTCTACAAACTGTTCGGCGATAACCCATCCGGTT TCACATGTTTGATCGTGAAAAAATCAACCCTAGCTGCGTCGATTTCGACCAGCTCCGATCATAAACCGTTATCCATCGTGGAATTGAATTCAGGCTTGTG CCCGAATTTCGAATTCCACGGATTGGATCACGCGGACGAATTGGGACTGATCACGATAAGCTACAGACTCCGGCTGTTAACGAATTGGTTGGTGAATTCG CTGCTCCAGCTCCGGCACCCGAGTTCGAGCTCTTTGTCCACCGGAGTTGATAATAATGTTACGTTGGTTAGGGTGTACGGTCCGGGGGTGGAATTCGACA GGGGGACGGCGGTGGGGTTCAATGTGTTCGATTGGAGAGGGGGGATGGTTGATCCAGCAATGGTGCAGAAGCTCGCCGGAAGAAGCGGGATTTCCGTGGG GTGTGGGTGTTTGAAGAATGTTTCGCAGGAGGCGACGGAGGAGGAGGACGGTGGTGGAGGGGTGAGGAGGATGGTGACGGCGGCGATTGGGTTGGTGACG GATTTTGAGGATGTGTATAGGGTATGGGGGTTTGTGGCGAGGTTTTTGGATGCTGATTTTGTGGAGAAGGAGAGTGTTAAACAAAGCAGAGATGAAGCCA CTAGAGTTTCCCTCCACGAACTTCCTGCGGATGTAATAGGTCTCATTTTGACCTTCTTGCCCATCAAAGAAGCAGCCAGGACAAGCATCCTGTCAACACA ATGGAGGCATCGTTGGAGGAGTATTCCCCGCATTGCATTCGATCGTCATTTCGCTACTATCTATCCTGGTTCGTATTCGAGTCGTGACAAGGTAATGCTG AATATTTACGAAGTTCTGCTGGTTCATGAGGGTCCCATCAATAAGTTTGAACTGTCGATCCCCGGGATGGAATTCGACCGTCAGCTGAATCAGTTGTTCC TTCACCTTTCTACCAAATCCGTCGATGAAATATCCCTTCTGTTTCAAAATTTAGGTGGTACATACATGTCACTGCCTTCCTCCCTTTTTTGCTCCATCTC CCTAGCCTGA
AA sequence Show only first row Show all	>Lus10006342 pacid=23178379 polypeptide=Lus10006342 locus=Lus10006342.g ID=Lus10006342.BGIv1.0 annot-version=v1.0 MGKTGDSVATCHCGICRIPCRRSANLVTSSDPSPAAAAFRTEFEASMANVHFTNHESLPSLDESFTKFTESFPKYLETKEADRIRAEEYSHLSVSNHVCL DYIGNGLFSNRREKTFPPSVASTSTAESTESSENPFFELSHKSVISLKSEIQNGIPESEFGTRLKNRVLSFMNISDEEYGVVYTANESSAFKLLADCYPF ETNRNLLTVYDHENEAVESMEKSAQKKGARVSSAEFTLPELGVQTEKLQRKITRNKKRRSKRSGLFVFPAQSRVTGARYSYLWMNSARENGWHVLLDASG LVPKEMETLGLSLFEPDFIICSFYKLFGDNPSGFTCLIVKKSTLAASISTSSDHKPLSIVELNSGLCPNFEFHGLDHADELGLITISYRLRLLTNWLVNS LLQLRHPSSSSLSTGVDNNVTLVRVYGPGVEFDRGTAVGFNVFDWRGGMVDPAMVQKLAGRSGISVGCGCLKNVSQEATEEEDGGGGVRRMVTAAIGLVT DFEDVYRVWGFVARFLDADFVEKESVKQSRDEATRVSLHELPADVIGLILTFLPIKEAARTSILSTQWRHRWRSIPRIAFDRHFATIYPGSYSSRDKVML NIYEVLLVHEGPINKFELSIPGMEFDRQLNQLFLHLSTKSVDEISLLFQNLGGTYMSLPSSLFCSISLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10006342 [exp]	0	1
AT2G04740			ankyrin repeat family protein ...		Lus10006408 [exp]	1.4	0.8712
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10037286 [exp]	3.7	0.8186
AT1G33970			P-loop containing nucleoside t...		Lus10003732 [exp]	6.2	0.8048
AT2G35615			Eukaryotic aspartyl protease f...		Lus10037254 [exp]	7.9	0.7176
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034278 [exp]	8.8	0.7711
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015749 [exp]	8.9	0.8023
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10004214 [exp]	9.2	0.7960
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	10.2	0.7984
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10000154 [exp]	10.4	0.7699
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Lus10009858 [exp]	10.8	0.7697

Compare expression of checked genes

Lus10006342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.