Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20680 114 / 4e-30 Domain of unknown function (DUF1995) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G132500 [exp] 144 / 3e-41 AT3G20680 313 / 8e-106 Domain of unknown function (DUF1995) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09353 [flax] [poplar] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Lus10006344 pacid=23178375 polypeptide=Lus10006344 locus=Lus10006344.g ID=Lus10006344.BGIv1.0 annot-version=v1.0 ATGGCTTCCAGTCTTCTCAAACTCCATTCCCAAATCTTCAGCAACAACTCACATCTCTCACCACCAACACCAAAGATCCTCAGCCGCCACTCTCTTCCAT TCTTCTCTGTAAACAAAACCTCTTATCATAATGAACTCATCTCCTTCTCCATCGATCTCCCAAAAAGATCCAAACTTCCCCCCTTCAGAGTCCACTCTTC GCTTTCCTCCACCAACCCACCAACCTCCAGAGAAGAAGCCATCACCCAAGCCAAAAATTGCCTCTCCAAAGCCTTGGAAAAGCCCCTCAACAACCCCAAT TTAACTGGCCGGGTCAAGAAGCTCAAACAACCCAAATTCCAGCTCGAAATCCCCATAATCGACGATGATTCCCCGTCTTCCTTATCTCAACTCGCCTTGG AAATCTTCGGTTCCTTGCCCGTAAAACGAAACGGGTCAAAGGTCGTCAAGATTCTCATCTTGTGGGCCAATTCCAAGCTCAGAGATGCTGCAATTGCAGC ATTTAGTTCATCAGCAGCATCGGAAAATGTGAAACATGTTGACATTTCCGCGTATGATATCAGATCACTGTCGGGCGCTGACGTGGCGGTGTTCCTAGTT CCGGAGAGGACGCAGATTGCGGAGGTGAAGAGGGTTGCGAACGGGTTGTATCCGAACCCGGTTGTGATCTTCAACCCGAAATGGGGGTTTGAAGGTGATG TGGTGGTGGGTTTGTGGATTCTTTTGAAGTGA
AA sequence Show only first row Show all	>Lus10006344 pacid=23178375 polypeptide=Lus10006344 locus=Lus10006344.g ID=Lus10006344.BGIv1.0 annot-version=v1.0 MASSLLKLHSQIFSNNSHLSPPTPKILSRHSLPFFSVNKTSYHNELISFSIDLPKRSKLPPFRVHSSLSSTNPPTSREEAITQAKNCLSKALEKPLNNPN LTGRVKKLKQPKFQLEIPIIDDDSPSSLSQLALEIFGSLPVKRNGSKVVKILILWANSKLRDAAIAAFSSSAASENVKHVDISAYDIRSLSGADVAVFLV PERTQIAEVKRVANGLYPNPVVIFNPKWGFEGDVVVGLWILLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20680			Domain of unknown function (DU...		Lus10006344 [exp]	0	1
AT5G17870		PSRP6	plastid-specific 50S ribosomal...		Lus10028238 [exp]	2.4	0.9064
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10004151 [exp]	5.8	0.8744
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10023321 [exp]	8.9	0.8689
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10035398 [exp]	15.9	0.8718
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	17.9	0.8680
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	18.1	0.8602
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10038575 [exp]	18.7	0.8623
AT1G26761			Arabinanase/levansucrase/inver...		Lus10037153 [exp]	19.3	0.8471
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Lus10016419 [exp]	19.6	0.8548
AT5G51110			Transcriptional coactivator/pt...		Lus10014182 [exp]	22.4	0.8593

Compare expression of checked genes

Lus10006344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.