Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 124 / 2e-31 F-box/RNI-like superfamily protein (.1) AT3G58860 66 / 2e-11 F-box/RNI-like superfamily protein (.1) AT5G02930 61 / 1e-09 F-box/RNI-like superfamily protein (.1) AT1G80960 59 / 3e-09 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) AT2G04230 58 / 6e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT2G26860 56 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT5G02700 56 / 3e-08 F-box/RNI-like superfamily protein (.1) AT1G69630 56 / 3e-08 F-box/RNI-like superfamily protein (.1) AT3G28410 53 / 2e-07 F-box/RNI-like superfamily protein (.1) AT1G67390 53 / 2e-07 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002959 [exp] 418 / 5e-146 AT1G13570 112 / 4e-28 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 351 / 1e-117 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 303 / 2e-99 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10028366 [exp] 176 / 3e-52 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10040686 [exp] 171 / 2e-46 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10028369 [exp] 152 / 2e-43 AT1G13570 66 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 139 / 1e-36 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 137 / 4e-36 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10035151 [exp] 138 / 2e-35 AT5G51170 306 / 7e-101 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 142 / 6e-38 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 128 / 1e-32 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 113 / 2e-27 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 99 / 4e-22 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 98 / 4e-22 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 57 / 1e-08 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104300 [exp] 57 / 1e-08 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 56 / 2e-08 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.004G034500 [exp] 55 / 7e-08 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G121500 [exp] 55 / 8e-08 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10006346 pacid=23178385 polypeptide=Lus10006346 locus=Lus10006346.g ID=Lus10006346.BGIv1.0 annot-version=v1.0 ATGAATCCACTAGCCGATGTTTGCAAACTTCCTGCCGACGTAATATCACTCATATTAACGTCCATGCCCATCCGAGAAGCTGTCAGGACCAGCATCCTGT CGAGACAATGGAGGCATCGTTGGAAAAGCATTCCGCAGCTTGTATTCGATGCCGATTTCGCTACTGTCGATCCTGCTCTAACAAACCAGGACAAGTTAGT AATTATACTCAACGTCTGCCAAACCCTGATGGGTCATCAACGTTCCGTAAACAAGTTCGAGCTTGCAATCCCCGGAATGAGCCTCTGTCCTCAGGTTGAT CCGTTGATCCATTACCTTTCCACAAAACATGTCAAGGAACTATCCCTCCTCTTCACCAGGAGTGATCAGCCTTATTCAATTCTCTCTTTACCGGACCTGA CAAGCCTGAAACTGCAAGGTTTCAAATTTGTGCTACCTCCACGGTTTGTCGGATTCGGTAAGCTTACTGTTCTTGATTTGACAGACTTAATCCTGCCCCG TGGGTTCTACGAGGATTTCCTTCCGCTATGTCCTCTGCTTGAAGAGTTGAGGGTTATAGATCACCGCAACGTCAACAACACGAAACCTATGTTTTCAGCT CCATGTCTTAGAGTGCTTCTCTTCAGCTCGTCTTTCGAGTCGATTTCCTTCAAGTATACGCCATGTCTTTCGGTTCTGTCGATTCTAGATGTTGGTGAGT TTGATTACTGGGAGTCCAATAGATCCAATGGATTCTTCGCAGCGCATAATCCTGATATGGTGGCTCTATTTGATGCTCTCCTAGCCCTTGAGGAGCTGAA TATTGGGCTTGAATTGCTGCTATTCCTTTCGGAAGGCCATGTCCCTTACCAGCTGCCTGCAACTCTCGACAACTTAAAATTCCTCCAAGCTAGTGACATT ATACTTAACAGGTTGCCAGAGACTCAAGTTCTTCTTTCTCTAATCCGAAGCTCGCCCAACTTGCAGAAGCTCACCATTGTGGTCGAAGGCTACGGCAGTC AGCCGGATTCAAAGTTTATGCATAGCTTGCAGAGGTTGTTGGCACCAGATTACTGCCTTGGAGCTTGTTGTCTTCAGCGACTTGAAGAGTTCAGCATCCA AGATAGTCGAGGGACTCACGTCGAGATGGACTTGGTGAGGTTTGTGCTGGCTACTGCCCCTAAACTGAAATGGGTCTTCCTCGAGCCTGTGAAAGATTTG TACTTCGATGCTATGCTGAAATTTGTAGTGGAGGTTACAAAGTTTAAACGGATTTCGAAAGAAGCAGAGGTCAATTATGTACTGCCATCATCCACCTAA
AA sequence Show only first row Show all	>Lus10006346 pacid=23178385 polypeptide=Lus10006346 locus=Lus10006346.g ID=Lus10006346.BGIv1.0 annot-version=v1.0 MNPLADVCKLPADVISLILTSMPIREAVRTSILSRQWRHRWKSIPQLVFDADFATVDPALTNQDKLVIILNVCQTLMGHQRSVNKFELAIPGMSLCPQVD PLIHYLSTKHVKELSLLFTRSDQPYSILSLPDLTSLKLQGFKFVLPPRFVGFGKLTVLDLTDLILPRGFYEDFLPLCPLLEELRVIDHRNVNNTKPMFSA PCLRVLLFSSSFESISFKYTPCLSVLSILDVGEFDYWESNRSNGFFAAHNPDMVALFDALLALEELNIGLELLLFLSEGHVPYQLPATLDNLKFLQASDI ILNRLPETQVLLSLIRSSPNLQKLTIVVEGYGSQPDSKFMHSLQRLLAPDYCLGACCLQRLEEFSIQDSRGTHVEMDLVRFVLATAPKLKWVFLEPVKDL YFDAMLKFVVEVTKFKRISKEAEVNYVLPSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10006346 [exp]	0	1
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	2.0	0.8611
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	3.5	0.8401
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	4.6	0.8137
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10004828 [exp]	4.9	0.8016
AT1G51405			myosin-related (.1)		Lus10009954 [exp]	13.4	0.7574
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008186 [exp]	15.1	0.7198
AT1G15170			MATE efflux family protein (.1...		Lus10018135 [exp]	15.2	0.7645
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028368 [exp]	16.9	0.7033
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	20.1	0.7183
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	21.8	0.7363

Compare expression of checked genes

Lus10006346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.