Plant FIBer expression Database

Lus10006348 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G11820 768 / 0 FKP1, EMB2778, MVA1, BAP1, HMGS FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002961
[exp]
819 / 0 AT4G11820 732 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G120300
[exp]
814 / 0 AT4G11820 796 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
Potri.001G111700
[exp]
813 / 0 AT4G11820 795 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
Potri.003G120400
[exp]
458 / 6e-162 AT4G11820 470 / 3e-167 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0046 Thiolase PF01154 HMG_CoA_synt_N Hydroxymethylglutaryl-coenzyme A synthase N terminal
CL0046 Thiolase PF08540 HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal
Representative CDS sequence
>Lus10006348 pacid=23178376 polypeptide=Lus10006348 locus=Lus10006348.g ID=Lus10006348.BGIv1.0 annot-version=v1.0
ATGGCGAAGAATGTTGGAATTTTGGCCATGGACATCTACTTCCCTCCTTCCTGTGTTCAACAGGCAGCTCTGGAAGAGCACGATGGAGCGAGTAAAGGGA
AGTACACAATTGGACTTGGACAGGATTGTATGGCATTTTGTACAGATGTAGAAGACGTCATCTCAATGAGTTTGACTGCTGTTACTTCACTCCTGGAGAA
GTATGGTGTTGATCCCAAGCAAGTTGGCCGTCTTGAAGTTGGAAGTGAGACCGTGATTGATAAGAGCAAATCAATCAAGACTTTCCTGATGCAGATCTTT
GAGAAATATGGAAACACGGATATAGAAGGTGTCGACTCGACGAATGCATGCTACGGAGGAACCGCAGCTCTGTTTAACTGTGTCAATTGGGTTGAGAGTA
ATTCCTGGGATGGTCGCTATGGGCTCGTCGTGTGTACTGATAGTGCGAGATGTGTAATGTTTATCAGGTCTATGCTGAAGGACCAGCCCGACCTACTGCG
ACCTACTGGAGGAGCTGCAGCAATTGTTATGCTAATAGGCCCCGATGCGCCCATTGTTTTTGAAAGCAAATATAGGGGGAGTTATATGTCTCATGCCTAC
GACTTTTACAAGCCCAACCTTGCCAGTGAATATCCGGTTGTAGATGGCAAGCTTTCTCAAACATGCTATCTCATGGCTCTTGATGCCTGCTACAAACATT
TTTGTGCCAAGTATGAGAAGTTTGAAGGAAAACAGTTCTCCATTTCTGATGCTGACTATACTGTTTTTCATTCTCCTTATAACAAGCTGGTGCAGAAAAG
CTTTGCTCGCTTACTATTTGACGACTTCACAAGGAAAGCAAGTTCCATCGATGAGGCTGCTAAAGAGAAGTTTGCACCATTTGCAACTTTATCAGGCGAT
GAGAGCTACCAAAGTCGGGATCTTGAAAAGGTGGCCCAACAAGTTGCCAAGCCATTATATGACACCAAAGTTCAACCAACGACATTGATACCGAAGCAAG
TTGGGAACATGTACACTGCATCTATCTATGCAGCTTTCGCATCCCTTCTGCACAACAAAAACAGTGCATTGGCGGGCAAGCGGGTTCTTATGTTCTCTTA
CGGAAGTGGTCTAACAGCCACAATGTTCTCACTCAAATTACAGGAAGGACAAAGTCCTTTTAGCTTGTCCAAAATTGCATCCGTGATGAACGTTGATGAG
AAGTTGAAGTCAAGAATTGAGGTCCAGCCAGAGAAGTTCGTGGAAACCCTGAAGCTAATGGAGCACAGGTACGGAGCCAAGGACTTTGTGACGAGCAAGG
ACACCAGCTGTCTGGCCCCAGGAACGTACTACCTCACGGAAGTTGACTCGATGTATCGAAGATTCTACTCGCAGAAGCCTGTCAACGGTACTCTAACCAA
CGGCTCGGCCATCAACGGCCATTGA
AA sequence
>Lus10006348 pacid=23178376 polypeptide=Lus10006348 locus=Lus10006348.g ID=Lus10006348.BGIv1.0 annot-version=v1.0
MAKNVGILAMDIYFPPSCVQQAALEEHDGASKGKYTIGLGQDCMAFCTDVEDVISMSLTAVTSLLEKYGVDPKQVGRLEVGSETVIDKSKSIKTFLMQIF
EKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSARCVMFIRSMLKDQPDLLRPTGGAAAIVMLIGPDAPIVFESKYRGSYMSHAY
DFYKPNLASEYPVVDGKLSQTCYLMALDACYKHFCAKYEKFEGKQFSISDADYTVFHSPYNKLVQKSFARLLFDDFTRKASSIDEAAKEKFAPFATLSGD
ESYQSRDLEKVAQQVAKPLYDTKVQPTTLIPKQVGNMYTASIYAAFASLLHNKNSALAGKRVLMFSYGSGLTATMFSLKLQEGQSPFSLSKIASVMNVDE
KLKSRIEVQPEKFVETLKLMEHRYGAKDFVTSKDTSCLAPGTYYLTEVDSMYRRFYSQKPVNGTLTNGSAINGH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G11820 FKP1, EMB2778, ... FLAKY POLLEN 1, hydroxymethylg... Lus10006348
[exp]
0 1
AT5G11150 ATVAMP713 vesicle-associated membrane pr... Lus10006192
[exp]
5.3 0.8215
AT2G42250 CYP712A1 "cytochrome P450, family 712, ... Lus10023827
[exp]
6.7 0.8396
AT1G08570 ACHT4 atypical CYS HIS rich thiored... Lus10015711
[exp]
10.0 0.8465
AT4G23740 Leucine-rich repeat protein ki... Lus10039321
[exp]
11.0 0.8492
AT5G66440 unknown protein Lus10028329
[exp]
12.8 0.8257
AT5G15140 Galactose mutarotase-like supe... Lus10015365
[exp]
18.1 0.8428
AT5G41940 Ypt/Rab-GAP domain of gyp1p su... Lus10023237
[exp]
18.2 0.8451
AT1G16570 UDP-Glycosyltransferase superf... Lus10014357
[exp]
23.4 0.7871
AT5G13050 5-FCL 5-formyltetrahydrofolate cyclo... Lus10042162
[exp]
23.8 0.8309
AT2G17080 Arabidopsis protein of unknown... Lus10023959
[exp]
24.0 0.8247

Lus10006348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.