Plant FIBer expression Database

Lus10006349 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002963
[exp]
179 / 6e-58 AT5G51910 53 / 1e-08 TCP family transcription factor (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G111800
[exp]
97 / 5e-24 AT2G45680 169 / 8e-49 TCP family transcription factor (.1)
Potri.002G152200
[exp]
49 / 4e-07 AT2G45680 286 / 6e-95 TCP family transcription factor (.1)
Potri.014G078500
[exp]
45 / 7e-06 AT2G45680 257 / 1e-83 TCP family transcription factor (.1)
Potri.012G135900
[exp]
41 / 0.0002 AT5G51910 219 / 1e-69 TCP family transcription factor (.1.2)
PFAM info
Representative CDS sequence
>Lus10006349 pacid=23178344 polypeptide=Lus10006349 locus=Lus10006349.g ID=Lus10006349.BGIv1.0 annot-version=v1.0
ATGACCGCGGCGACGGCGATTCCCTCGGCGGCTGCTCAAGGATTGGTTCCCGTTTGGGCAGTTGGGAGCAGTGGGATGATGGTCCCAGCTAACGCGATTT
GGATGATACCTCAAGCCCAGGGCGGTATTGGGCCTGCTGGGGCAAACTACGGCCCTGTTGTTAATCAGCAGCAGCAGGCCCAGTTATGGGCGTTATCTCC
TCCCGTTTTCAACGTCACGCAGGCCAACTCGGTGCCGGCAGCTAGGCCCATCTCGTCGTACGTGTCGGCGAACAGCGGTAGTAACGGTCACCTCCCCTCC
GGGGGAGGAATGGATATGAGAGCTCCTCCGCCTCCGCCGCCAGAGGTGACAGCAAGCTCGACGGTGGGGTCTAAACTGGCAGCGAAGAGATCGTCGGCAA
TGGCGCCCAGCGTGAGCTCCGGCGGGGACGGCGGAGGGAAAGTTCGAATTCTACGGGACTTTTCGCTGGAGATTTACGAGAAGCAGGAGTTGCAACTGAT
GGACAGACGCGGCGGGGGGAATAATCAGTCTCAAGGGAAGAGTTCTGCAGAGTCGTAA
AA sequence
>Lus10006349 pacid=23178344 polypeptide=Lus10006349 locus=Lus10006349.g ID=Lus10006349.BGIv1.0 annot-version=v1.0
MTAATAIPSAAAQGLVPVWAVGSSGMMVPANAIWMIPQAQGGIGPAGANYGPVVNQQQQAQLWALSPPVFNVTQANSVPAARPISSYVSANSGSNGHLPS
GGGMDMRAPPPPPPEVTASSTVGSKLAAKRSSAMAPSVSSGGDGGGKVRILRDFSLEIYEKQELQLMDRRGGGNNQSQGKSSAES

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10006349
[exp]
0 1
AT5G17630 Nucleotide/sugar transporter f... Lus10019209
[exp]
3.6 0.8684
AT5G58020 unknown protein Lus10036615
[exp]
6.0 0.8402
AT3G12050 Aha1 domain-containing protein... Lus10017240
[exp]
11.9 0.8552
AT3G45230 hydroxyproline-rich glycoprote... Lus10037404
[exp]
15.0 0.8451
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10009842
[exp]
17.9 0.8461
AT5G45420 MYB maMYB membrane anchored MYB, Duplica... Lus10018605
[exp]
18.3 0.8399
AT5G13890 Family of unknown function (DU... Lus10041505
[exp]
20.1 0.8269
AT4G32400 EMB42, EMB104, ... SODIUM HYPERSENSITIVE 1, EMBRY... Lus10002902
[exp]
20.3 0.7191
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10007533
[exp]
20.7 0.8415
AT1G79870 D-isomer specific 2-hydroxyaci... Lus10025796
[exp]
22.6 0.8396

Lus10006349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.