Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G07200	473 / 1e-167	ATGA20OX3, YAP169	ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
AT4G25420	471 / 6e-167	AT2301, GA5, ATGA20OX1	GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
AT1G60980	469 / 7e-166	ATGA20OX4	gibberellin 20-oxidase 4 (.1)
AT5G51810	464 / 6e-164	AT2353, GA20OX2, ATGA20OX2	gibberellin 20 oxidase 2 (.1)
AT1G44090	337 / 5e-114	GA2OX5, ATGA20OX5	ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1)
AT5G05600	189 / 2e-56		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
AT3G11180	185 / 1e-54		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
AT3G19010	181 / 7e-54		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
AT5G24530	172 / 3e-50	DMR6	DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
AT3G21420	165 / 2e-47	LBO1	LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10006722 [exp]	704 / 0	AT1G60980	489 / 5e-174	gibberellin 20-oxidase 4 (.1)
Lus10015016 [exp]	596 / 0	AT4G25420	494 / 3e-176	GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10027399 [exp]	573 / 0	AT4G25420	514 / 0.0	GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10031671 [exp]	573 / 0	AT5G07200	508 / 1e-180	ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
Lus10041390 [exp]	453 / 1e-159	AT5G51810	468 / 2e-165	gibberellin 20 oxidase 2 (.1)
Lus10036539 [exp]	452 / 5e-159	AT5G51810	464 / 3e-164	gibberellin 20 oxidase 2 (.1)
Lus10038894 [exp]	417 / 2e-145	AT5G51810	354 / 7e-121	gibberellin 20 oxidase 2 (.1)
Lus10005037 [exp]	187 / 1e-55	AT3G11180	471 / 3e-166	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Lus10004808 [exp]	183 / 2e-54	AT5G05600	457 / 5e-162	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.015G134600 [exp]	518 / 0	AT5G51810	525 / 0.0	gibberellin 20 oxidase 2 (.1)
Potri.012G132400 [exp]	505 / 6e-180	AT5G51810	522 / 0.0	gibberellin 20 oxidase 2 (.1)
Potri.002G151300 [exp]	493 / 8e-176	AT4G25420	503 / 1e-179	GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.014G073700 [exp]	480 / 3e-170	AT4G25420	481 / 9e-171	GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.007G103800 [exp]	392 / 1e-135	AT5G51810	408 / 6e-142	gibberellin 20 oxidase 2 (.1)
Potri.005G065400 [exp]	381 / 2e-131	AT5G51810	402 / 8e-140	gibberellin 20 oxidase 2 (.1)
Potri.005G184200 [exp]	366 / 8e-126	AT5G51810	383 / 1e-132	gibberellin 20 oxidase 2 (.1)
Potri.005G184400 [exp]	364 / 6e-125	AT5G51810	380 / 5e-131	gibberellin 20 oxidase 2 (.1)
Potri.012G006300 [exp]	195 / 3e-59	AT5G24530	506 / 0.0	DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.016G117100 [exp]	194 / 1e-58	AT5G05600	491 / 4e-175	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0029 [flax] [poplar]	Cupin	PF03171 [flax] [poplar]	2OG-FeII_Oxy	2OG-Fe(II) oxygenase superfamily

Representative CDS sequence

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>Lus10006350 pacid=23178346 polypeptide=Lus10006350 locus=Lus10006350.g ID=Lus10006350.BGIv1.0 annot-version=v1.0

ATGACGACGGACATTGTGAATTCGCCATCACCGACGACGACACCCATGCAAACCAACTCCTTAATCTTCGACGCCAACTTACTCAACGACGGTTCGTCCA

ACATTCCCGAGCAGTTCGTGTGGCCTGACCACGAGAAGCCTCAGGGGAATGCTCCGGAGCTCGACGTCCCTGTGATCGACCTGGCCGGATTCTTTTCCGG

CGACCCAGCTGCCGCCGTCGAGGCGGCGACCCTCGCCGGCGAGGCATGTAGGAAGCACGGGTTCTTCCTCATCGTCAACCACGGCGTGGACGGGCGTCTC

CTCTCCGGCGTCCATGAGTACTTGGACGGCTTCTTCGGGCTGCCGCCTTTGGAGAAGCAGAAAGCACAGAGGAAGCTCGGCGAGAGCGTTGGCTACGCCG

GTAGCTTCCTCGGTAGATTCTCCTCCAAGCTTCCCTGGAAGGAAACGCTGTCGCTTCGATTCAATGCCGCGAAAGATTCCCCTAAGACCGTTAGAGATTA

TCTTGTCAACACAATGGGTCAAGATTTCTCTGATTTCGGAAATCTATACCAGGAGTACTGTGAAACGATGAGTAAGTTGTCGCTTAGGATCATGGAGTTG

TTGGGGACGAGCTTAGGGGTGAAGAACAAAGGGCATTTCAGGGATTTTTTCCAAGACAATGATTCGATAATGAGGCTGAACTATTACCCGTCGTGCCAGA

AACCTGACGCTACACTAGGAACGGGCCCCCATTGCGATCCGACTTCGTTGACGATCCTGCACCAGGACGAAGTGGCCGGGTTGCAAGTGTTTGTGGACAA

CGAGTGGCGCTCTATCAACCCTAAGCCCAACGCCTTTGTCATCAACATTGGTGACACTTTCATGGCGTTGTCGAACGGGCAATTCAAGAGCTGCCTACAC

AGAGCGGTGGTGAACAGGACGAAGGCGAGGAAGTCATTGGCATTCTTCTTGTGTCCGAAGAGCGACAAGGTCGTGATGCCACCGGAGGAGCTGGTGGACG

AGGACAATCCAAGGGTGTATCCGGATTTCACTTGGGCGATGTTGGTAGAGTTCACCCAAAAGCACTATAGATCCGACATGAACACCCTCGAGGTCTTCAA

GACTTGGCTTCTTGATCAGCAGCAAACCAACTTAAAGTAA

AA sequence

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>Lus10006350 pacid=23178346 polypeptide=Lus10006350 locus=Lus10006350.g ID=Lus10006350.BGIv1.0 annot-version=v1.0

MTTDIVNSPSPTTTPMQTNSLIFDANLLNDGSSNIPEQFVWPDHEKPQGNAPELDVPVIDLAGFFSGDPAAAVEAATLAGEACRKHGFFLIVNHGVDGRL

LSGVHEYLDGFFGLPPLEKQKAQRKLGESVGYAGSFLGRFSSKLPWKETLSLRFNAAKDSPKTVRDYLVNTMGQDFSDFGNLYQEYCETMSKLSLRIMEL

LGTSLGVKNKGHFRDFFQDNDSIMRLNYYPSCQKPDATLGTGPHCDPTSLTILHQDEVAGLQVFVDNEWRSINPKPNAFVINIGDTFMALSNGQFKSCLH

RAVVNRTKARKSLAFFLCPKSDKVVMPPEELVDEDNPRVYPDFTWAMLVEFTQKHYRSDMNTLEVFKTWLLDQQQTNLK

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10006350 [exp]	0	1

Lus10006350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10006350 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10006350 coexpression network