Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43820 372 / 2e-125 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT2G43840 361 / 3e-121 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT1G05675 334 / 2e-110 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 333 / 2e-110 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G24100 321 / 2e-105 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT2G31750 312 / 4e-102 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G31790 311 / 9e-102 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 232 / 1e-70 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 231 / 2e-70 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 223 / 3e-67 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006721 [exp] 685 / 0 AT2G43820 392 / 9e-134 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006353 [exp] 523 / 0 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014148 [exp] 499 / 2e-175 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10008742 [exp] 491 / 6e-172 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10024486 [exp] 482 / 1e-168 AT1G05680 389 / 4e-132 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10017825 [exp] 466 / 4e-162 AT2G43840 392 / 2e-133 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006351 [exp] 460 / 5e-162 AT1G05680 315 / 9e-106 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10020556 [exp] 371 / 4e-125 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 371 / 4e-125 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175000 [exp] 425 / 3e-146 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032300 [exp] 399 / 6e-136 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G117200 [exp] 394 / 6e-134 AT2G43840 461 / 1e-160 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G140500 [exp] 386 / 8e-131 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.001G389200 [exp] 380 / 2e-128 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032500 [exp] 374 / 3e-126 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.015G071900 [exp] 374 / 4e-126 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.007G140300 [exp] 372 / 2e-125 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 371 / 5e-125 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 371 / 5e-125 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10006352 pacid=23178356 polypeptide=Lus10006352 locus=Lus10006352.g ID=Lus10006352.BGIv1.0 annot-version=v1.0 ATGGCGAACCAGACGAATCAGCCACACTGCCTAGTAATCCCATTACCAGCAGCAGGGCACATAAACCCAATGCTCCAATTCTCCAAACGCCTAGTCCCCA AAGGCATCAAAGTCACTCTAGTCCTCACCCGTTTCCTCTCCAAGTCCATAACCTCCCCTGCCTTAAACATCAACCTAGCCACCATCTCCGACGGGTTCGA TGACGGCGGAACCGAAGCCGCGGGGAGCTCGGAAGTCTGGCTGACGACATTCCGGGAAGTGGGTTCGGAAACTCTGGCTCAGCTCATTCAGAAATTCAGC GAGGCAGGGGACCCTGTACATTGTGTAGTGTACAATCACTGCATTCCTTGGTGCTTAGATGTTGCGAAGAGGTTTGACTTGCTGGCGGCAGCGTTCTTGA CACAGTCGTGCGCGGTGGACTGTGTTTATAAGCTTATTCACGAGGGAGTTGTTAAGCCGCCGGTGAAGGAAGAGGATGGGGTTTTGAGGTTTGAGGGGCT GCCGCCGCTGACGGCAGGGGATCTGCCGTCTCTTGTGTCGGATGTTGGGAGTTACGGCGCCGTTTTGGATGCGCTTGTCGGGCAGTACGAGAATATAAAG GATGCTGATTGGGTGCTCTGTAATTCCATTTACGAGCTCGAACCTGAGGCTGCAAATTGGCTATCAAAGAAGGTACCGAACTTCACAACAATCGGTCCAA CAATCCCCTCGATGTACTTAGACAAGCAACTCCGAGACGACGTGGACTACGGGTTCAACATCTTCAAGCCCATCAACGAGCCCATCAAGAACTGGCTGTC AACCAAGCCCAATAACTCAGTAGTCTACGTCTCATTCGGCAGCATAGCGACCCTATCCCCGGCCCAAATGGAGGAGCTATACCACGGGCTCAACAACTCC AACCACTACTTCCTCTGGGTAGTCAGGAAAACCGAAGAGGACAAACTCCCCCAACACTGCATCTCCCCAAAGGGTCTTGTCGTGTCGTGGTGTCCGCAGA TGGAAATGCTCGCGAGCCCGGTAATGGGGTGCTTCCTGACGCATTGTGGATGGAACTCGACGCTTGAGGCTGTGAGCCTTGGCGTGCCCATGGTGGTGAT GCCTCAATGGGCGGACCAGTTTACGAATGCTAAGTTCATAAGGGATGTTTGGAAGGTGGGTGTGATGGTTGGAGGAGATGATGAGGGTGGGTTGGTGAGA AGGGGAGAGATTGAGAGATGTGTTAAGGAAGTGATGGAAGGTGAGAAAGGAGAAGAGATGAGGAGGAATTGTGAGAAGTTTGGGGAGTTGGTGAAGGATG CTGCGACCGAAGGTGGGAGTTCCGATGGGAACATTCGTCGGTTCGCTAGTAGCTTGATTCGAGCCGTGAAGTTTTGA
AA sequence Show only first row Show all	>Lus10006352 pacid=23178356 polypeptide=Lus10006352 locus=Lus10006352.g ID=Lus10006352.BGIv1.0 annot-version=v1.0 MANQTNQPHCLVIPLPAAGHINPMLQFSKRLVPKGIKVTLVLTRFLSKSITSPALNINLATISDGFDDGGTEAAGSSEVWLTTFREVGSETLAQLIQKFS EAGDPVHCVVYNHCIPWCLDVAKRFDLLAAAFLTQSCAVDCVYKLIHEGVVKPPVKEEDGVLRFEGLPPLTAGDLPSLVSDVGSYGAVLDALVGQYENIK DADWVLCNSIYELEPEAANWLSKKVPNFTTIGPTIPSMYLDKQLRDDVDYGFNIFKPINEPIKNWLSTKPNNSVVYVSFGSIATLSPAQMEELYHGLNNS NHYFLWVVRKTEEDKLPQHCISPKGLVVSWCPQMEMLASPVMGCFLTHCGWNSTLEAVSLGVPMVVMPQWADQFTNAKFIRDVWKVGVMVGGDDEGGLVR RGEIERCVKEVMEGEKGEEMRRNCEKFGELVKDAATEGGSSDGNIRRFASSLIRAVKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006352 [exp]	0	1
AT4G31680	B3	REM8	Transcriptional factor B3 fami...		Lus10010080 [exp]	2.8	0.8732
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10030609 [exp]	5.5	0.8256
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10027327 [exp]	8.0	0.8013
					Lus10016118 [exp]	8.8	0.7886
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010469 [exp]	9.2	0.7886
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041913 [exp]	10.2	0.7761
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10019795 [exp]	12.5	0.8079
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	15.5	0.7542
AT4G10925			Nuclear transport factor 2 (NT...		Lus10003192 [exp]	15.9	0.7658
					Lus10025505 [exp]	15.9	0.8520

Compare expression of checked genes

Lus10006352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.