Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43820 394 / 7e-134 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT2G43840 383 / 1e-129 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT1G05675 380 / 1e-128 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 380 / 1e-128 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT2G31750 352 / 1e-117 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G31790 352 / 2e-117 UDP-Glycosyltransferase superfamily protein (.1) AT1G24100 341 / 3e-113 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT4G15480 260 / 2e-81 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT1G05560 259 / 5e-81 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT4G15490 255 / 1e-79 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014148 [exp] 743 / 0 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10017825 [exp] 572 / 0 AT2G43840 392 / 2e-133 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006352 [exp] 563 / 0 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10008742 [exp] 540 / 0 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10024486 [exp] 535 / 0 AT1G05680 389 / 4e-132 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10006721 [exp] 524 / 0 AT2G43820 392 / 9e-134 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 429 / 2e-147 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 417 / 4e-143 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 417 / 7e-143 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175000 [exp] 517 / 0 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G140500 [exp] 460 / 8e-160 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032300 [exp] 452 / 2e-156 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G179300 [exp] 446 / 5e-154 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.001G389200 [exp] 442 / 3e-152 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032500 [exp] 437 / 7e-151 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 430 / 8e-148 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 430 / 8e-148 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140300 [exp] 430 / 8e-148 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.015G071900 [exp] 416 / 2e-142 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10006353 pacid=23178351 polypeptide=Lus10006353 locus=Lus10006353.g ID=Lus10006353.BGIv1.0 annot-version=v1.0 ATGGCGGAACACGAAGAATTCTCAGAACCCATCTACAAAGCCCACTGCTTGATGGTCCCAATTCCAGCTCAAGGCCACATCACCCCTGTCCTCCAATTCG CCAAATATTTAATCCCCAGAAAAATCCGGGTCACCCTCGCCCTGACCCGGTTCATCTCCAAAACCGCCAACATCTCCTCCTCCTCCGCCGCTGGCGGAGG AATCCACCTGGAGACAATCTCCGACGGCTTCGACGAGCACGGCTTAGCGGTCACCGACGATGGGCAAGTCTACTTCGACACTTTTGAGAGAGTGGGTTCC CAAACTCTGGCCGATCTGGTTCGTAAACAGAGCGATGCAGGGCACCCTGTGAATTGCATCCTCTACGATCCTCACATTCCGTGGTGTTTGGACGTTTCCA AGAGGTTTGGATTGATCGGAGCTGCGTTCTTCACTCAGTCCTGCGCCGTCGATGCCGTCTTCTACCACGTTCATCGGGGGTTGCTCAAGCCGCCGGTGAC TGAAGTTGAAGAAACGGTGTCGATTCCTGGGTTGCCGCCGTTCGAACCTCATGACTTGCCTTCTTTTGTTCATGACGGATCGTATCCGGCGTTTCTAGCC GCGCTTGTAGGACAATTCTCCAATATTCAGAACGCCGATTGGGTGCTCTGCAACTCTGTTCACGAGCTGGAACCAAAGGCTGCGGACTGGCTTTCGAAGA ACTTGCCGAATTTCAAAACGATCGGGCCAACACTTCCATCGTTCTACCTAGACAAGCAATTACCGGACGACAAAGATTATGGACTCAGCTTCTTCAAGCC AGACAATGAAGCTTGCAGCAATTGGCTTCAAAGCAAACCAAAACGGTCCGTTGTGTACGTATCATTCGGCAGCATAGCCGATCTAGGACCGGAGCATGTT GAGGAACTCTGCTGGGGATTGAAGAACAGCAACCATTACTTCCTATGGGTGGTCAGATCGTCCGAGGAAGCGAAGCTTCCTCTGATGTTCAAGGCCGAAA CAGCAGAGAAAGGACTTATTGTGTCATGGTGTTCACAGCTGGAAGTTCTGGCGAGTGGAGCGGTGGGGTGCTTCCTAACGCACTGTGGATGGAACTCGAC CCTGGAGGCGATGAGCCTGGGAGTGCCGATGGTGGCCATGCCGCGATGGACCGACCAAACAACGAATGCTAAGTTCATATCGGACGTTTGGAAGACGGGT GTGAAGGCTAAAAAGGATGAGAAGAAAGGGGTTGTGGGAAGAGATGAGATAGAGAGATGTGTGAAGGAAGTGATGGAAGAAGGTGAAGAGACAAGGAGGA ATTGTGACAAGTTTGCGAAGTTGTGCAAGGATGCGGTTGGGGAATGTGGTAGCTCTTGTAGGAGCATCACTTTGTTTGCTGATAGCCTGATTCTGGCTTC AAGAACTCACCCGTAG
AA sequence Show only first row Show all	>Lus10006353 pacid=23178351 polypeptide=Lus10006353 locus=Lus10006353.g ID=Lus10006353.BGIv1.0 annot-version=v1.0 MAEHEEFSEPIYKAHCLMVPIPAQGHITPVLQFAKYLIPRKIRVTLALTRFISKTANISSSSAAGGGIHLETISDGFDEHGLAVTDDGQVYFDTFERVGS QTLADLVRKQSDAGHPVNCILYDPHIPWCLDVSKRFGLIGAAFFTQSCAVDAVFYHVHRGLLKPPVTEVEETVSIPGLPPFEPHDLPSFVHDGSYPAFLA ALVGQFSNIQNADWVLCNSVHELEPKAADWLSKNLPNFKTIGPTLPSFYLDKQLPDDKDYGLSFFKPDNEACSNWLQSKPKRSVVYVSFGSIADLGPEHV EELCWGLKNSNHYFLWVVRSSEEAKLPLMFKAETAEKGLIVSWCSQLEVLASGAVGCFLTHCGWNSTLEAMSLGVPMVAMPRWTDQTTNAKFISDVWKTG VKAKKDEKKGVVGRDEIERCVKEVMEEGEETRRNCDKFAKLCKDAVGECGSSCRSITLFADSLILASRTHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006353 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019991 [exp]	2.8	0.9558
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	3.0	0.9646
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10035258 [exp]	7.5	0.9504
AT4G01870			tolB protein-related (.1)		Lus10038052 [exp]	10.2	0.9501
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	11.0	0.9427
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	12.5	0.9479
AT5G09680		RLF	reduced lateral root formation...		Lus10039342 [exp]	13.0	0.9389
					Lus10026081 [exp]	13.0	0.9458
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	15.2	0.9348
AT4G21970			Protein of unknown function, D...		Lus10021536 [exp]	15.3	0.9071

Compare expression of checked genes

Lus10006353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.