Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04400 517 / 0 Aldolase-type TIM barrel family protein (.1) AT5G48220 483 / 4e-171 Aldolase-type TIM barrel family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012310 [exp] 752 / 0 AT2G04400 537 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10001179 [exp] 569 / 0 AT5G48220 534 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3) Lus10001753 [exp] 116 / 1e-28 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169100 [exp] 538 / 0 AT5G48220 516 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00218 [flax] [poplar] IGPS Indole-3-glycerol phosphate synthase
Representative CDS sequence Show only first row Show all	>Lus10006354 pacid=23162669 polypeptide=Lus10006354 locus=Lus10006354.g ID=Lus10006354.BGIv1.0 annot-version=v1.0 ATGATGGAGGGTTTAGTGTCATTGAAATCCACTTCCGGTGTCTCCTCTCCTTCTACCGCCGCCGCTTCTATTCGGCGTCGCCCCAGCTTCTCAATCACCC GGTCCTTCGTTAATCTCCCAAAGGGGAAAAGCTTCTCCAGCGTCACCTCAATTCGAGCTCAACAACTTGAAGCAATGGATGTCGTGACCAAAGCTAGCAT TTCCAAAGAAGAGTTAGAGAGTGTTCTTAAAGCCAAGGAGTGGGAAGTGGGGATGCTTCAAGACGAATTGGCTGCTAGTCAAGGGATTCGAATCAGGAGG CGACCGCCAACTAGCCCGCCATTGCACTACATTGGACCCTTTGAATTCACTGTTCAAAATGAAGGCGATGATGATAGTCCAAGGAACATCCTAGAGGAGA TTGTATGGTACAAGGACACTGAAGTTTCCCAAATGAAAGCGATGATGCCCTTCTCTACGCTGAAGAAAGCTCTGGAGGATGCTCGTCCGACCCGAGATTT CGTTGGGGCGTTAAAAGAAGCAAATCTTCGAACTGGGTTTCCTGGTTTGATCGCGGAAGTGAAGAAGGCATCTCCTAGCAGAGGGGTCCTCAGAGAGAAT TTCGACCCTGTGGAAGTTGCTCAATCTTATGAGAAAGGTGGAGCTGCATGTCTCAGTGTCTTGACGGACGTAAAGTTCTTTCAGGGGGGTTTCATAAACT TGGAGGCAATAAGGAAAGCTGGAGTTAAGTGCCCGCTACTGTGCAAAGAATTTATCGTAGACATGTGGCAGATCTATTATGCGAGACTTAAAGGAGCAGA TGCAGTTCTTCTAATAGCTGCAGTTTTGTCTGACCTTGACATCAAATACATGATCAAGATCTGCAAGATGCTTGGTTTGGCAGCACTTGTTGAGGTGCAC GATGGGAGGGAAATGGATCGTGTTCTTGGAATAGATGGCATCGAACTTATTGGCATTAACAACCGTAGTCTTGAAACATTTGAGGTTGATATCAGTAACA CGAAGAAGCTACTCGAAGGAGATCGTGGCAAACTCATCCGTGACAAAGGCATAATTGTAGTGGGCGAATCTGGGCTGTTCACTCCTGAACACATCGCTTA TGTGCAAGAAGCTGGTGTTGGAGCGGTTTTGGTTGGGGAATCGCTGGTGAAACAAGGGGATCCGGGACAAGGAATCTCTGGTCTCTTTGGCAGAGACATA TCTGCATAA
AA sequence Show only first row Show all	>Lus10006354 pacid=23162669 polypeptide=Lus10006354 locus=Lus10006354.g ID=Lus10006354.BGIv1.0 annot-version=v1.0 MMEGLVSLKSTSGVSSPSTAAASIRRRPSFSITRSFVNLPKGKSFSSVTSIRAQQLEAMDVVTKASISKEELESVLKAKEWEVGMLQDELAASQGIRIRR RPPTSPPLHYIGPFEFTVQNEGDDDSPRNILEEIVWYKDTEVSQMKAMMPFSTLKKALEDARPTRDFVGALKEANLRTGFPGLIAEVKKASPSRGVLREN FDPVEVAQSYEKGGAACLSVLTDVKFFQGGFINLEAIRKAGVKCPLLCKEFIVDMWQIYYARLKGADAVLLIAAVLSDLDIKYMIKICKMLGLAALVEVH DGREMDRVLGIDGIELIGINNRSLETFEVDISNTKKLLEGDRGKLIRDKGIIVVGESGLFTPEHIAYVQEAGVGAVLVGESLVKQGDPGQGISGLFGRDI SA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	0	1
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	1.0	0.9771
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	1.4	0.9729
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	3.0	0.9627
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10019400 [exp]	3.5	0.9692
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10034343 [exp]	4.9	0.9613
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	5.5	0.9621
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	6.0	0.9709
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	6.3	0.9627
AT4G11120			translation elongation factor ...		Lus10016073 [exp]	6.6	0.9551
AT2G04400			Aldolase-type TIM barrel famil...		Lus10012310 [exp]	6.6	0.9615

Compare expression of checked genes

Lus10006354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.