Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25810 358 / 6e-116 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 358 / 1e-115 AtTPS10 terpene synthase 10 (.1) AT4G16740 352 / 8e-114 ATTPS03 terpene synthase 03 (.1.2) AT3G25830 352 / 3e-113 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 352 / 3e-113 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT4G16730 340 / 1e-109 AtTPS02 terpene synthase 02 (.1) AT1G61680 250 / 6e-75 ATTPS14 terpene synthase 14 (.1.2) AT1G70080 245 / 1e-72 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 230 / 3e-67 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G23960 227 / 2e-66 ATTPS21 terpene synthase 21 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006356 [exp] 971 / 0 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10012312 [exp] 934 / 0 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10033643 [exp] 457 / 1e-153 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10025922 [exp] 413 / 8e-137 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10038179 [exp] 411 / 5e-136 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10001110 [exp] 399 / 5e-132 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10018500 [exp] 364 / 3e-118 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10018501 [exp] 364 / 1e-117 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10039713 [exp] 359 / 1e-115 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G041700 [exp] 429 / 2e-143 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G118600 [exp] 421 / 6e-140 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.019G023006 [exp] 403 / 3e-133 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 400 / 1e-132 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G022338 [exp] 381 / 1e-124 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 380 / 2e-124 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 380 / 3e-124 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 376 / 6e-122 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.019G023020 [exp] 342 / 1e-112 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.011G031800 [exp] 338 / 2e-108 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10006355 pacid=23162672 polypeptide=Lus10006355 locus=Lus10006355.g ID=Lus10006355.BGIv1.0 annot-version=v1.0 ATGGCTTCCGTACTCCAAGGTGCACCAATTATCTACTGCCATCTATATATAAGCAGGCAGCCGCTCCACAGTCACAAACTAATCAAACCCTATAATCCTC CGACGAGATTACAGCAAAGCAGCTCCGGTGGCTGTTGGGAAATCCATGCAGCGGAGCCAAAATCATCGACGACAGCGCATCCTGAAGTCGTTGAACGGCG ATCCGGAAACTACGGTCCAAATATCTGGGAGTCCCATCAGTTTTCCATGCCACATCACGATGACTCCAACTCTATACAAGAGAGAGTGGGGGATCTGAAG AAGTACGTGAAACAAAAGCTGCTGAATATTGGTACTGTTAATGGAGAAGGAGACCGGGAAGATGATGATGGTGATCGGGAAATTGCGAAATGGGTCGAGA CGATTGACAGAGTGCAACGGTTGGGAATCGGGTACCATTTCGAGGAGGAAATTCAGAGTGCCCTGACAAAGCTAAGCTCTATGAAACCATCAAGAGGAAA CCTACATGCTCGTGCCCTTTGGTTTAGACTACTTCGACAAGCTGGAATCTGGGTATCTCCAGATATTGTCGAAGGAATCAAGGACGACGATGCTAATAAT GGGAAGAAGTTAAAGGCAGAAAAGAGTACTAGTACTACTGATGTCAGGGCATTGATTAGTTTGTACGAGGCGTCATATCTGGGAACACCACATGAAACTG TTCTGAACGATGCCAGAAGCTTTGCTAGGGAACATCTGCTACTTGATATCAAGAATACAAAAATGATGATGATGCTGACGTGTCCAAAACTACTACTAGC CAAACAATTGGAGAGAACGTTGGAGCTCCCTTGTCATTGGCGGACACAACGGTCGGAGGCTAGGTGGCACATTGAACAATACCAGCAATTAGACGGCGAC GACATAGAGGATCCAGCCTTGCTTGAGTTGGCAATCTTGGACTTCAACATCGTCCAGCTTGTCTACCAATCCGACTTGGCCGAGCTTAACCGGTGGTGGA AAGAATTGGGGTTGCCGGAGAAACTGGAATTCGCAAGAGATAGGCTGATGGAGAGTTTCCAGTGGGCAGTGGGTATAAGCCCGGAGCCAGAGTTCAGCTA CTGTAGGAAGACAGTGTCGAAGCTCATAGCTCTCATCAATGTCATTGACGATGTCTATGACGTATATGGTTCCTTGGATGAACTCCACCTCTTCACTGAT GCCATCCACAGGTGGGACACAAATGGACTAGAGATGCTTCCAAAATACATGCAGATATGCTTCATGGCCGTCTACAACACTACAAATGAACTTGCATACC ACACTTTGAAACAGCAAGATTTCAACTGCTTGCCTTACGTTAAACAAGCATGGCAAGAGCAGTGTAGATTGTATCTGGAAGAAGCCAAGATGTTCCATAC CGTTGGATCTCACCAAACATTTGAGGAATACTTGGAGAACGGCCAGAACACAATAGGATCACGCATCGTGTTGATCCACGCCTACGCTTCATCGGGTGAT TGTCTCACAAAGGAAGCTTTTGATTACTTAGCTAACTACCCCGACCTCACTCGTTGGACAGCCACCATCTGTCGTCTCACGAACGATTTAGCAACTTCTA AGGGTGAATTAGAAAGAGGAGATATTCTCAAGTCGGTAGAATGCTACAGTAAGGAGAAAAATGTCACGGAAAAAGAAGCGCGCGAGTATATAGAATGGCG AATTGATGAAACGTGGAAGAGGATGAATCGAGATGTCATGTCTAACTACGGACACATGAAAATGTACACAAACCAGGTGGTGAATTTCGCTCGAGTGTCC CATTTCATGTACCATAATGGAGACGCCCACAGCAAGCCTACTCAAAGGCACAAAGATCGTGCCATGGCCTTGCTTTTCCAGCCCTTCTCAATTCATGCAA TGGAGAACAACTAA
AA sequence Show only first row Show all	>Lus10006355 pacid=23162672 polypeptide=Lus10006355 locus=Lus10006355.g ID=Lus10006355.BGIv1.0 annot-version=v1.0 MASVLQGAPIIYCHLYISRQPLHSHKLIKPYNPPTRLQQSSSGGCWEIHAAEPKSSTTAHPEVVERRSGNYGPNIWESHQFSMPHHDDSNSIQERVGDLK KYVKQKLLNIGTVNGEGDREDDDGDREIAKWVETIDRVQRLGIGYHFEEEIQSALTKLSSMKPSRGNLHARALWFRLLRQAGIWVSPDIVEGIKDDDANN GKKLKAEKSTSTTDVRALISLYEASYLGTPHETVLNDARSFAREHLLLDIKNTKMMMMLTCPKLLLAKQLERTLELPCHWRTQRSEARWHIEQYQQLDGD DIEDPALLELAILDFNIVQLVYQSDLAELNRWWKELGLPEKLEFARDRLMESFQWAVGISPEPEFSYCRKTVSKLIALINVIDDVYDVYGSLDELHLFTD AIHRWDTNGLEMLPKYMQICFMAVYNTTNELAYHTLKQQDFNCLPYVKQAWQEQCRLYLEEAKMFHTVGSHQTFEEYLENGQNTIGSRIVLIHAYASSGD CLTKEAFDYLANYPDLTRWTATICRLTNDLATSKGELERGDILKSVECYSKEKNVTEKEAREYIEWRIDETWKRMNRDVMSNYGHMKMYTNQVVNFARVS HFMYHNGDAHSKPTQRHKDRAMALLFQPFSIHAMENN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	0	1
AT3G59160			F-box/RNI-like superfamily pro...		Lus10003943 [exp]	1.0	0.9699
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	1.4	0.9606
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	2.0	0.9342
					Lus10039498 [exp]	3.2	0.8841
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	3.5	0.9510
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10017124 [exp]	4.9	0.9108
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024818 [exp]	5.5	0.9118
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	5.7	0.8986
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10032980 [exp]	5.9	0.9024
AT5G47700			60S acidic ribosomal protein f...		Lus10033403 [exp]	6.7	0.8986

Compare expression of checked genes

Lus10006355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.